Strawberry lethal yellows phytoplasma (CPA): SLY_0014
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Entry
SLY_0014 CDS
T02674
Symbol
ykqC
Name
(GenBank) Metallo-Beta-Lactamase Family Protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
nzs
Strawberry lethal yellows phytoplasma (CPA)
Pathway
nzs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nzs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SLY_0014 (ykqC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nzs03019
]
SLY_0014 (ykqC)
Messenger RNA biogenesis [BR:
nzs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SLY_0014 (ykqC)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Motif
Other DBs
NCBI-ProteinID:
AGL89941
UniProt:
R4RNE3
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Position
13198..14886
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AA seq
562 aa
AA seq
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MNNVTSNIDLNKLDVSFFALGGLGEVGKNMYVFEIGKEIFIVDSGFSFSENFLLGINYVI
PDYQYLRDNESRIVGLFITHGHEDHIGGIPYLLKKVHIPKIFVSGIAYHLLRYKLLEHKD
VGALPPMVNYNADSCYHFQNASISFIRVNHSIPDTFGIVIKTKYGNLFYTSDFKIDYTPV
GPPAEYEKLIKIRQEGVLCLLSDSTNAEQEGVVKSESTIGHSIDELFVQIPDRIIIVTFA
SNFYRIKQIVEATILTKRKIAVFGRSMKKSLEIGQKNGYLNIPEGTLVPSHNIHKYRDII
LLCTGSQGEPLAALSRMANNSHRQIKLNYKDTIIFSSSPIPGNQENINKTLDLLLQKNVN
VITHGPLINTHVSGHGNQNDLKLMLTLIQPKYFIPVHGERRMLQAHKNLAVECNISEENI
FILDNGQRISLIPDEAHIVNTIPMEDVFLDASGMNYLGNSILQERRFLSQEGLFAVVMSI
DVKKKQILSSPTIVSRGFIYMKSNQELIKKISLDIKNSIEKAIKNNEVDKEVLKKIIIDY
LFTKIYQMTFRKPIIIPIILTI
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgaataatgtgacctcaaatatagacttaaataagttggatgtttctttctttgcccta
ggaggtctgggcgaagttggcaaaaatatgtatgtttttgaaataggaaaagaaattttt
attgttgattcaggtttttctttttcagaaaattttttattaggaattaattatgttatt
cctgattatcagtatctaagagataacgaatcaaggattgtaggcctttttatcactcac
ggtcatgaagaccatatcggcggaatcccttatttattaaaaaaagttcatattcctaaa
atttttgtttcagggattgcttatcatttattaagatacaaattattagaacataaagat
gttggtgcactgccaccaatggttaattataacgctgattcttgttatcattttcaaaat
gcttcaatttcttttattagagttaatcattctattcctgatacttttggtattgttatc
aaaactaaatatggcaatcttttttatactagtgattttaaaattgattatactccagta
ggacctccggctgaatatgagaaattaattaaaatccgacaagaaggggttttatgttta
ctttctgattctaccaatgctgaacaagaaggagtagttaaatcggaaagtactatcgga
cattctattgatgaattgtttgttcaaatacctgatagaattattatagttacttttgct
tctaatttttatcggatcaagcaaattgttgaagccactattttaactaaaagaaaaatt
gctgtttttggccgtagtatgaaaaaatctttagaaattggtcaaaaaaacggttattta
aatattcctgaaggaactttggtccctagtcataatattcataaatatcgtgatattatt
ttattatgtacaggttctcaaggtgagcctcttgcggctttaagtcgtatggcaaacaat
agtcacagacaaattaaacttaattataaagacactattattttttcttcttctccgatt
cctggtaaccaagaaaacattaataaaactcttgaccttcttttacaaaaaaatgttaat
gttattactcacggacctttaattaacactcacgtttcgggtcatggaaatcaaaatgac
cttaaattaatgcttaccttaattcaacctaaatattttattccggtgcatggtgaacgt
cgtatgttgcaggctcacaaaaatttagcggtagaatgcaacatttcagaagaaaatatt
tttattttagataacggccaaagaatttctttaattcctgatgaagcccatattgtaaat
actattcctatggaagatgtttttcttgacgcttcgggcatgaattatcttggtaattct
attttgcaagaacgtcgttttttaagtcaagaaggtttgtttgcggttgttatgagtata
gacgttaaaaaaaagcaaatccttagttcgccaacaattgtttctcgtggatttatttat
atgaaaagcaaccaagagttaattaaaaaaatttctttggatattaaaaatagcattgaa
aaagctattaaaaacaatgaagtagacaaagaagttttaaagaaaatcatcattgattat
ctttttaccaaaatatatcaaatgacttttagaaagcctattattattcctattatttta
actatataa
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