KEGG   Ochrobactrum anthropi OAB: DR92_3927Help
Entry
DR92_3927         CDS       T03251                                 

Gene name
ligD
Definition
(GenBank) DNA ligase D
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
oah  Ochrobactrum anthropi OAB
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:oah00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    DR92_3927 (ligD)
Enzymes [BR:oah01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     DR92_3927 (ligD)
DNA repair and recombination proteins [BR:oah03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     DR92_3927 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
LinkDB All DBs
Position
2:1447406..1449910
Genome map
AA seq 834 aa AA seqDB search
MGQSLETYRRKRDFTLTNEPRGKSSRTKRELFVVQKHDARRLHYDFRLEMDGVLKSWAVT
RGPSLVPGEKRLAVHVEDHPLEYADFEGTIPKGKYGGGTVIVWDTGRWKSTADAHQQYKK
GHLEFELTGEKLKGRWHLIRMHGKPDEKRENWLLIKGEDEFSRNPDEPDILVEMPKSVKT
GRAIADVEHEAPGWSSKTGSINKKSNAQGDGGGANIKNAKKRPMPSFVKPELATLVSVAP
DGNRWLHEIKFDGYRIQAHIAGGKVALYSRGGLDWTEKFGQQIARDLVGTSVNEAIFDGE
IVVESQSGLSDFSALQEDLREGRSDRFVYYLFDLLHVDGKDLRQTPLVERKTLLEKLISA
SSSTLRFSEAFDADGAAVLKNACGLGLEGIVSKLREASYRSGRSNDWRKSKCIGRQEFVI
AGYVPSTVTRAAIGSLLLGVQDKKGLVPVGRVGTGFSVRIAKELYKRLQAMRQGGSPFAV
PLTADERRGAKFVTPLLVAEIEFRAWTADKRLRHASFRGVRDDKAAKDVIWEKQTMSPRI
SSKGPEEIDVKLTHPDRVYWPGEGVTKQGLADYYSAIWSSIEPFIVNRPLALLRCPTGID
GEHFFQRHAWKGLNEHIIEVQDPENKEEEPYISIRDFNGLIGLVQAATLEIHPWGSTLKN
WELPDTLTMDLDPGEGVPWSRVIEAAIETKERLEKLGLKTFVKTSGGKGLHVVAPLKPKV
DWDALKSFTKAIADQMAADSPDRYVSTISKAKRKGKILIDYLRNQRGMTAVAPYSPRARP
GAAVSMPLGWDEVTSAIGPAHFTIVNTPNRLAALNSDPWQDFRSAETPLPKLKK
NT seq 2505 nt NT seq  +upstreamnt  +downstreamnt
atgggacagtcactcgaaacctatcgcaggaaacgcgattttaccctgactaacgagccg
cgcggtaagtcttcgcgcacaaaacgcgagctctttgtcgtgcaaaaacatgatgctcgc
agactgcattatgattttcgccttgagatggatggcgtgctgaaaagttgggctgtgacg
cgaggtccaagccttgttcctggcgaaaagcgactggccgtgcatgtggaggaccatccg
cttgaatatgcggacttcgaaggcacgatccctaaaggcaagtacggtggtggtacagtt
atcgtctgggatacagggcgttggaaatccactgctgatgcacatcagcaatacaagaaa
gggcatcttgagttcgagctcacaggggaaaaactcaaaggtcgctggcatttgatccgg
atgcacggaaagccagacgagaagcgagagaattggctcctcatcaagggggaggacgaa
ttttccagaaatcctgatgaacctgacattcttgtagagatgccgaaatcggtaaaaacc
ggccgcgccatcgccgatgtcgaacacgaagcgccaggatggtcatcgaaaactggttcg
atcaacaaaaagtcgaacgctcaaggggatggtgggggcgcaaatatcaaaaatgcgaag
aagcgaccgatgccgagtttcgtcaaacctgagctcgctacgctcgtatcagttgctcca
gatggaaaccgctggcttcacgagatcaagttcgacggttatcgcatccaggctcatatt
gcggggggcaaggtcgccctttattcgcgtgggggactggattggactgaaaaatttggc
cagcagattgccagagatcttgttggtacgagcgtgaacgaagccatatttgatggggag
atcgttgtcgaaagccagtcgggactgtctgacttttcagctttgcaagaggatctaagg
gagggacgttctgatcgattcgtttattaccttttcgatctactgcatgttgatggcaaa
gaccttcgccagacgcctctggttgagcgcaaaacgctgctcgaaaaattaatttctgca
tcatcgtcaacacttcgcttcagcgaggcctttgatgccgatggggctgcggtactgaag
aatgcctgcggacttggccttgagggcattgtgtcgaagctcagggaggcatcttataga
agcggtcgcagcaacgattggcgtaagtcgaaatgcattggacgacaggaattcgtcatt
gcaggctatgttccgtcgacggtaacgcgagcggcaatcggttcgctccttttgggtgta
caggataagaaggggctggttcccgtaggccgggtgggaacaggcttttcggtcaggatt
gcaaaagaactttacaaacggctgcaagccatgcggcagggagggagcccattcgccgtg
ccgctgacggcagatgaaaggcgcggagccaagttcgttacaccgctgctggtagcggaa
atcgaatttcgtgcctggactgccgataagcgattgcgtcacgcgtccttcaggggggta
cgagacgataaggctgccaaggacgtcatatgggagaagcaaaccatgtcaccccgtatt
tccagtaaaggccccgaggagatcgacgtgaagctcacacatcccgaccgggtttactgg
ccgggcgaaggtgtcacaaaacagggtctcgcagattattattccgctatctggtccagc
atcgaacctttcatcgtcaaccgccccctggcattgttacgctgcccaaccggaattgac
ggagaacacttctttcaaaggcacgcgtggaaggggttgaatgaacatattatcgaagtt
caagatccagagaacaaggaagaggagccttatatcagcattcgggacttcaacgggctg
atcggtctggtgcaagccgcgacgctggaaattcacccctggggttctacgctcaaaaat
tgggagctaccggatacgttgacaatggatctcgatccgggtgagggcgttccatggtcg
cgcgtgatcgaagccgcaatcgagaccaaggaacgtctggaaaaactcggattgaagacg
tttgttaaaacgtccggtggcaagggactacatgtggtcgcgccattgaagccgaaggtc
gactgggacgccctcaagagctttacaaaggctattgccgaccagatggctgcagacagt
cctgatcgctatgtttcgacgatttccaaggccaagcgcaaaggcaaaattcttattgat
tatctgcgcaatcagcgcggcatgactgctgtagcaccctattcgccgcgggcacgtcct
ggtgctgcagtttccatgccgcttgggtgggacgaagtgacgtcagcaataggccccgcc
cattttactattgtcaacacgccgaaccggctggccgcattgaatagcgatccctggcag
gattttcgcagcgcggaaacgccgctgcctaagctgaagaaatag

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