Oxalobacter aliiformigenes: NB647_03480
Help
Entry
NB647_03480 CDS
T08749
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
oal
Oxalobacter aliiformigenes
Pathway
oal02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
oal00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NB647_03480 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oal03021
]
NB647_03480 (rpoD)
Transcription machinery [BR:
oal03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NB647_03480 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DUF4238
UTP20_C
GerE
Motif
Other DBs
NCBI-ProteinID:
WAV89875
LinkDB
All DBs
Position
734563..737046
Genome browser
AA seq
827 aa
AA seq
DB search
MDKSDKPQSVAGETNNTTLTVKRRGRRRHDEAVAGVNAEGVVPSEASAVSASGEVTVHVK
RGRKKAVFDESVTPEGVAVKVKSSRGRKPKLATGGQETVASVSGKGNVSDTIVTTDAARL
AAIDTSSYVLPTVKVPGRRGRKPKDFQPENEEVAALNAVERAELKAADKARAKDRKAKEK
ALLKDALAGDTEATEEELERRRERLKILIKLGKERSFLTYAEINDHLPDNVIDPDAIEGI
ISTFNDMGISVYEHAPDAEDLLLTDNVVTVTSDEEAEAAAEAALSTVDSDFGRTTDPVRM
YMREMGSVELLTREGEIEIAKRIEEGLKDMIQAISSCPTTILEIIEQAEKIRNDEVRIDE
VVDGMADEEDDAPVMAAASDSDQDDSDEEDSDADEGDEEDAEEDEGDGGSAGSAAAGFSA
EQLEKLKEDALARFALIETHFKEMQRAFEEDGYNSPAYVKAHDRISEELLGMRFTARFIE
KLCDTLRTQMDEVRQIEREILNVVVNKCGIPRAHFIKTFPGNETNMEWVDEEVDAGHPYS
EILSRNVPMVKELQQKLVDIENRIGMPLTDLREINRKMVAGEMRARKAKKEMTEANLRLV
ISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGAEPDPATLAAKMDMPEDKIRKIMKIAKEPISM
ETPIGDDDDSHLGDFIEDNNTLAPADAALHASMRSVVKDVLDSLTPREAKVLRMRFGVEM
STDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDKLKSFLESN
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
atggataaatcagataaaccccaatcagtggcaggtgaaacgaacaatacgacgcttacc
gtcaagcggcgcggccggcgcaggcatgatgaggcggttgccggtgtgaatgcggaaggc
gtggttccgtccgaggcgtctgccgtatcggcttctggcgaagtgactgtgcatgtgaaa
agagggcggaagaaagcggttttcgatgaaagcgtcacgcctgaaggcgtcgctgtcaag
gtcaagagttcacgcggcagaaaacccaaactggcgacgggaggccaggaaacggttgca
tccgtttccgggaaaggcaacgtatccgatacgattgtcacaaccgatgcggcacggctg
gcggcgatcgatacttccagctatgtgttgcccaccgtgaaggtaccgggacgccgtggc
cgcaagcccaaggatttccagccggaaaacgaggaagtggccgcattgaacgcggtggaa
cgcgctgaactgaaagcggccgacaaggctcgtgcgaaggatcgcaaggccaaggaaaag
gcgttgttgaaggatgcgctggcaggcgatacggaggcaacggaagaagaactggagcgt
cgccgtgaacggctgaaaatactgatcaagctgggcaaggaacgttcgtttctcacctat
gccgaaatcaacgaccatttgcccgacaatgtcatcgatcctgatgcgatcgaagggatc
atcagtacgttcaatgacatgggcatttcggtgtatgaacatgcccccgatgcggaagat
ctgttgctgaccgataatgtcgtcacggtcacaagcgacgaagaggccgaagcggcagcg
gaagcggcgctttcgacagtggattccgatttcggccgtacgacggatcctgtccggatg
tatatgcgtgaaatgggatcggtcgaactgctgacgcgcgagggggaaatcgaaatcgcc
aaacggatcgaggaaggtctgaaagacatgatccaggcgatttcatcctgtccgaccacg
attctagaaattatcgaacaggcagagaaaatccgtaacgacgaagtcagaatcgatgaa
gtggttgacggtatggctgacgaggaggatgacgcgcctgtgatggcggccgcatcggac
agtgatcaggatgattcggatgaagaagattccgatgcggatgagggcgatgaagaagac
gcagaggaagatgagggcgatggcgggtctgccggtagtgcggctgccggcttttctgca
gagcagcttgaaaaactcaaagaagacgctctggcaagatttgcactgatcgaaacgcat
ttcaaggaaatgcagcgggcttttgaagaggacggttacaattctccggcttatgtgaaa
gcgcacgatcgtatttcggaagaattgctgggaatgcggtttacggcacggttcattgaa
aagctgtgcgataccttgcgtacgcaaatggatgaagttcgccagatagaacgtgaaatt
ctcaatgtggtggtcaacaagtgcgggattccgagagcgcacttcatcaagactttcccg
ggcaacgaaaccaatatggaatgggttgacgaggaagtcgatgccggtcatccgtacagc
gagattctttcccgcaacgttccgatggtcaaggaattgcagcagaagctggtcgatatc
gaaaaccgtatcggtatgccgctgaccgatttgcgtgaaatcaaccgcaagatggtggcg
ggtgaaatgcgtgcccgcaaggccaagaaggaaatgacggaagcgaaccttcgtctggtg
atttcgattgcgaaaaaatataccaatcgcggtttgcagttcctggatttgatccaggag
ggcaatatcggtctgatgaaggcggtggacaaattcgaataccgtcgcggctacaagttt
tcgacctatgccacctggtggattcgtcaggctattacgcgttcgatcgccgatcaggcg
cgtactatccgtattccggttcacatgattgaaaccatcaacaagatgaaccgtatttcc
cgacagattttgcaggaaaccggtgcggaacccgatccggcgacactggcagccaagatg
gatatgcctgaagacaagatccgcaagatcatgaagatcgcgaaggaacccatttcgatg
gaaacgccgatcggagatgatgatgattcacatctgggagatttcatcgaggacaacaat
acgctggcacctgccgatgcggcgttgcatgcctcgatgcgcagcgtggtcaaggatgtc
ttggattcgctgacaccaagggaagcgaaggtgttgcggatgcgcttcggtgtcgagatg
tcgacggaccatacgctggaagaagtcggcaaacaattcgacgtgacacgtgaacgtatt
cgccagattgaagcaaaagcattaagaaaattgcgtcatccgtcgagatcggataaactt
aaaagtttcctggaaagcaattga
DBGET
integrated database retrieval system
