Osmia bicornis bicornis (red mason bee): 114880309
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Entry
114880309 CDS
T06109
Name
(RefSeq) collagen alpha-1(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
obb
Osmia bicornis bicornis (red mason bee)
Pathway
obb04512
ECM-receptor interaction
obb04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
obb00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
114880309
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
114880309
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
obb04147
]
114880309
00536 Glycosaminoglycan binding proteins [BR:
obb00536
]
114880309
Exosome [BR:
obb04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
114880309
Glycosaminoglycan binding proteins [BR:
obb00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114880309
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
114880309
NCBI-ProteinID:
XP_029052017
LinkDB
All DBs
Position
Unknown
AA seq
1955 aa
AA seq
DB search
MTRLGLRFVASAVFLAGIVSAQFNHTSWSNDPPPVVPLGRGDIGKPNSTDDEYIAPRWRA
FLSNNEGSEEADRRNLEPYDEGRNYDDGYNRYPDGGEYGQRSGTDGSGGYQRGYGGGDRR
TYSQSHSQSHSQSHSQSQGQGTQDPYNQGPVDPYGRSRGYEDTYGRGAEVEGQRSRDPYG
DGYGENRGSGDAYGREDPYGRGYSQGQGGGYGAAGGSDNYPSSYSAVPIPGRAQPKNCTG
SACCVPKCFAEKGSRGSPGVMGPQGPKGQRGFPGAEGLLGPKGEKGDPGPQGPRGPKGDR
GKMGMPGFPGINGVPGVQGSPGSPGLPGRDGCNGTDGEPGLRGLPGEPGPRGFRGTPGPK
GDKGQPAFAGMFPVGQKGEPGIDGVRGPPGPPGPQGEHGIPGSKGERGPYGGSGIPGPKG
EKGNMGLGFEGVKGDKGQKGEQGPPGSSVPLVPFEGVPPEVTGEKGEPGGKGDKGEMGLD
GQKGEPGLIGDHGIPGYSGGKGEKGLPGAPGIRGRDGFSGPPGPPGRKGDRGYDGLDGIP
GRPGQKGQPGRDGPMGTSGLRGPPGPPGGGKGTPGPPGPKGPQGFPGPIGPRGADGYPGD
PGPRGPIGMTGGPGSQGIPGPEGLPGEKGGKGEPGITGFPGPTGPRGFDGPPGSPGPRGL
QGEKGLSIVGPKGMDGAPGLDGEKGQKGERGYSGPRGFPGDSLDGIPGSPGEPGFPGEPG
TPGKDGAPGFPGAPGEKGDIGGRCQDCLPGLSGLKGDRGLDGTPGLPGPRGPPGERGFPG
EAGADGLPGQIGRPGPPGKDGIPGSAGPQGEPGTPAIVSESSIKLEKGERGLRGEPGRPG
PPGPQGPPGEKGALGFEGFPGAKGTAGDRGFPGQDGIPGRPGVPGRKGESGISVKGEPGE
PGRIGATGFKGEPGLYGQKGEPGECPPLTWVKDLKGDRGSQGEKGEPGPPGRDGPSGDKG
LQGFSGPPGPPGQIGPPGPVGPRGLPGPRGDKGDMGPMGFPGEPGREGPRGFPGAPAPKG
DKGEPGISVKGSPGLPGPPGEKGEKGLPGPPGKEGQVGFPGLPGFMGEKGDVGVPGISGL
PGAPGGKGDTGPVGPRGPPGVAGIPGLDGMKGEPGLPGEPGRAGLPGFPGAKGDRGEPGI
DGPKGYPGRRGPPGLQGRPGVEGAPGMKGERGEKGSSGFPGLPGMEGRPGPPGSSGDKGD
DGLPGPPGLVGPIGFDGLKGDRGPPGLPGRKGEPGQVSEKGQKGEPGIPGIRGPSGPSGR
DGIDGAKGESGIPGIGRDGLPGPKGEPGIPGRDGMPGFQGQKGDTGVRGFPGLKGDFGPP
GASGEPGTPGIDGLPGDRGDIGPPGPPGFPGLDGDMGAPGRPGLNGSKGERGFSGPSGLP
GIAGGPGEKGDRGPPGPTIQVKGEKGEPGIPGLSGAPGEKGDRGLEGLAGYDGEKGDRGA
PGPAGNPGPPGHSGAKGDEGPRGPSGILGLTVKGEKGLPGMPGKHGREGIPGRPGEKGEQ
GLPGLPGYKGDQGPYGPIGPQGEKGDMGPAGTPGLPGRDGRPGLEGMPGLLGEKGDKGDI
GLRGLPGIPGQKGEAGFPGPSGLDGLPGEKGDRGWDGLNGAPGTSGEKGDRGYPGPAGLK
GPPGYLGPKGDKGEDCIEPPMGPKGDRGYPGPTGPPGPQGEKGLPGPPGFSGLDGVKGAS
GLPGPPGPAGLPGLPGPVGSPGLPGLQGPVGVPGPAGEPGQPCDVIPDYLTGILLVRHSQ
SQTVPVCEPGHIKLWEGYSLLYTDGDERAHSQDLGYAGSCVRKFSTMPFLFCDVNNVCHY
ASRNDRSYWLSTNSPIPMMPIEETAIEEYISRCVVCEVPANVLAVHSQSLSIPECPQGWT
GLWIGYSFVMHTGAGSQGGGQSLSSPGSCLEDFRATPFIECNGAKGHCHYYANEFSFWMA
SIEDRQQFQRPEKQTLKAGNLRSRISRCQVCIKNT
NT seq
5868 nt
NT seq
+upstream
nt +downstream
nt
atgacccggttgggattgcgattcgtcgcgtccgcagtcttcctagccgggattgtcagt
gcgcaatttaatcacacatcatggtcgaacgatcctccaccggttgttccactgggacga
ggtgatatcggaaagccaaatagtacagatgacgaatatattgcacctagatggagagct
tttctttcgaacaacgaaggttcagaggaagcagacaggcggaatttagaaccatatgac
gaaggccgaaattacgacgatggatacaacagataccccgatggcggtgaatatggtcaa
agatctggaaccgatgggtcgggaggatatcaacgaggttatggaggcggagatcgaagg
acctacagccagagccatagccagagccatagccagagccatagccagagccagggacaa
ggcactcaggatccttacaatcaaggacccgttgatccttacggaagatctcgaggttat
gaggacacttacggaagaggagcagaagtagaaggacaacgttctagagatccttatggc
gatggctacggagaaaatcgtggatccggagacgcttacggtcgtgaagatccttatggc
cgaggatactcgcaaggtcaaggaggaggatacggtgcagctggtggctcggacaattat
ccgagtagttattcggctgtgccaattccaggacgagctcaaccaaagaattgcaccgga
tcagcttgctgtgtaccgaaatgttttgcagaaaaaggctcgagaggttcaccaggtgta
atgggaccacagggtcccaaaggtcaaagaggatttcctggagcagaaggtctcctagga
ccgaaaggagagaaaggtgatcctggtcctcagggaccacgtgggccaaaaggtgacaga
ggaaaaatgggtatgcccggattccccggtataaatggtgttcccggagttcaaggttct
cctggatctcctggtcttcctggtcgtgacggatgcaacggaacagacggtgaacctggt
cttcgtggtcttcctggagaacccggtcctcgtggttttcgaggtacgccaggtcctaaa
ggagataaaggtcaaccagcgtttgctggcatgtttcctgttggtcagaaaggagaacca
ggtatcgatggtgtgagaggacctccaggtcctccaggacctcaaggagaacacggaata
ccaggatcaaagggtgaacgtggtccttatggtggatctggaatacctggtccaaaagga
gagaaaggcaacatgggtctcggatttgaaggtgtaaagggtgataaaggtcaaaaggga
gagcaagggccgccgggttcatctgttcctcttgtaccattcgaaggagtgccaccagaa
gttacgggtgaaaagggagaacctggtggaaaaggagacaagggtgaaatgggacttgat
ggtcaaaaaggagaaccaggtttaattggagatcatggtatacctggctattcaggtggg
aaaggagagaaaggtcttccaggagctcccggtattcgcggtagggatggtttctcagga
cctccaggtccacctggacgtaaaggagatcgtggttacgatggattagacggaattcct
ggtcgtcctggtcagaagggacaaccgggtcgagatggacctatgggtacttcaggatta
cgaggacctccaggtccgccaggaggcggtaaaggtacgccaggtccaccaggaccaaaa
ggacctcaaggttttccaggtccaattggacctcgtggtgctgatggatatccaggagat
ccaggtccaagaggtcctataggaatgaccggtggtcctggttcacaaggtattcctggt
cccgagggattgccaggagaaaaagggggcaaaggagagcctggaatcactggattccca
ggaccaacaggacctagaggtttcgacggtcctcctggttcgcctggtccacgaggtctt
caaggagagaaagggctgtcgattgtgggccctaaaggaatggatggagcacctggttta
gatggagagaaaggacaaaagggagaacgcggttattcaggaccgcgtggattcccaggg
gactctttggatggaattcctggatcgccaggtgaacctggttttccaggagagccagga
actccaggaaaagatggtgctccaggttttccaggagctccaggtgaaaagggagatatc
ggaggacgttgtcaagattgtttgccaggactatcaggacttaaaggagatcgtggtctc
gatggtactcctggtcttcctggaccacgtggtccaccaggagaacgaggattccccggg
gaagctggtgctgatggactgcctggacaaattggacgaccaggaccaccgggtaaagat
ggtattcctggttcagccggccctcaaggagaaccaggtacgccagcaattgtttcagaa
agttcgattaaactggagaaaggtgagagaggtttacgaggcgaacccggaagacccggt
ccaccgggtccacaaggtcctcctggagagaagggtgcacttggattcgaaggattcccg
ggtgccaagggtacagctggagatcgtggattccctggacaagatggcatacctggtaga
ccaggtgttccaggacgaaaaggagaaagtggtatcagcgtgaaaggagaacctggagaa
ccaggtcgaataggtgcaaccggattcaaaggtgaacctggtttgtacgggcaaaaagga
gaacctggcgagtgtccaccattgacatgggttaaggatctaaaaggtgatagaggatct
cagggtgaaaaaggagaacccggacctccgggaagagatggaccaagtggtgacaaaggt
ttacaaggtttttcgggaccacctggtcctcctggacaaatcggtccacctggaccagtt
gggccacgaggattaccagggccgcgaggtgataaaggtgatatgggacctatgggtttc
cctggagagcctggacgtgaaggaccaagaggattccctggtgctccagctccgaaagga
gacaagggtgaacctggaatatcagttaaaggtagtcctggtttgcctgggccaccagga
gagaaaggagaaaaaggtttaccaggaccgccaggaaaagaaggacaagtcggcttccct
ggtctgccaggatttatgggagaaaagggtgacgttggagttccaggaataagtggttta
cctggtgcacctggagggaagggtgatactggaccagttggaccccgaggtcctcctggt
gtagcgggaattcctggtctagatggaatgaaaggtgaacctggattaccgggagaacca
ggcagagctggtcttccaggattccctggtgcgaaaggagatcgaggcgaaccaggtatc
gatggaccaaaaggttatcctggtagacgtggtccacctggcttacaaggtagacctggt
gtagaaggtgcacctggaatgaagggagagcgaggtgagaaaggttcatctggtttccct
ggattacctggcatggaaggaagacctggaccacctggttcatctggagataaaggagat
gatggccttcctggccctcctggtttagtgggtccaattggattcgacggacttaaaggt
gatcgaggtccaccaggtttgccaggtcgtaaaggtgaaccgggtcaagtgtcagagaaa
ggtcaaaagggtgagccaggtataccaggaatccgcggtccttcgggtccttctggtaga
gatggtattgatggtgcaaaaggagaatctggaatacctggtatcggtcgtgatggatta
ccaggaccaaagggagaacctggtataccaggtcgtgatggtatgccaggatttcaagga
caaaaaggtgatacaggagttagaggattccctggacttaaaggagatttcggaccacca
ggtgcatcaggtgaaccaggaacacctggaatcgatggtttgcctggcgatcgtggtgat
attggtccacctggacctcctggtttccctggtctagacggtgatatgggagctccaggg
cgtcctggacttaacggatccaaaggagaacgcggtttctcaggtccttctggtcttcct
ggtattgctggtggacctggagaaaagggtgaccgtggaccacctggcccaacaattcag
gtcaaaggtgaaaaaggtgaaccaggtattcccggattatcaggtgcacctggagagaaa
ggtgatcgtggtttagaaggtcttgctggatacgatggtgaaaagggagaccgaggtgca
cctggtccagctggaaacccaggaccaccaggacatagtggtgctaaaggtgacgaagga
ccacgcggaccctcaggcattttaggattaactgtcaaaggtgaaaaaggtttaccaggt
atgccaggaaaacatggacgagagggaataccagggcgaccaggagaaaaaggagagcaa
ggattgccaggtctgccagggtacaaaggagatcagggtccttatggtcccattggccca
cagggtgaaaaaggtgatatgggccctgcgggtactcctggtctaccaggtcgtgatgga
cgtccgggtcttgaaggaatgccaggtttactgggtgaaaaaggtgataaaggagacatt
ggtctacgaggattgcccggtattccaggacaaaagggagaagcaggatttccaggacct
agcggattggatggacttcccggagaaaagggtgacagaggctgggacggactgaatggt
gctcctggaacttctggagagaaaggtgacagaggatatcctggtccagcaggattgaag
ggtccgcctggttatctaggtccaaaaggtgacaagggtgaagattgtatcgaacctccc
atgggaccgaaaggagatcgtggataccctggacctacgggtccaccagggccacaagga
gaaaagggacttccgggaccaccaggattctcaggattggatggagtgaagggtgcatcc
gggcttccaggacctccaggcccagctggtttgccaggtctacctggccctgtcggttcg
cctggtttgccaggtttgcaagggcctgtgggagttccaggtcctgcaggtgaacctgga
caaccgtgcgatgtgatccctgattatcttactggtatcttgttggtcagacacagtcaa
agtcaaacggttccagtttgcgagccaggacacatcaaactctgggaagggtacagttta
ttgtacacagatggtgatgaaagagcgcattcgcaagatttaggttacgctggttcctgc
gtaagaaagttctcgactatgccattcctcttttgcgacgtcaacaacgtgtgccattat
gccagtcgcaacgatcgttcttactggctgtcgaccaatagtccaattcccatgatgcct
attgaggagacggcgatagaagaatacatctccaggtgtgtggtatgcgaagttccagcg
aatgtgttagcagtgcacagtcagtcattgagcattccagagtgtccacaaggatggacc
ggtctttggatcggatacagtttcgtcatgcatactggtgccggctcccaaggtggagga
cagtcactgtctagtcctggatcctgtctggaggacttccgtgccacgccgttcatcgag
tgcaacggcgccaaaggacactgccattattatgcgaacgaattcagtttttggatggcc
agcatcgaagataggcaacaattccaaaggcccgaaaaacagaccctgaaggcaggtaac
ctcaggtcccgaataagtcgctgccaagtgtgtataaagaacacgtaa
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integrated database retrieval system
