Octopus bimaculoides (California two-spot octopus): 106880623
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Entry
106880623 CDS
T04127
Name
(RefSeq) exosome complex component RRP46
KO
K12590
exosome complex component RRP46
Organism
obi
Octopus bimaculoides (California two-spot octopus)
Pathway
obi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
obi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106880623
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obi03019
]
106880623
Messenger RNA biogenesis [BR:
obi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
106880623
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
106880623
NCBI-ProteinID:
XP_014786135
EnsemblRapid:
LOC106880623
UniProt:
A0A0L8FWW3
LinkDB
All DBs
Position
5:complement(19701530..19714550)
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AA seq
217 aa
AA seq
DB search
MNGEIKKQQLRKMSCELSLLSRPDGSASLSCGDTSMMASVYGPAEVKIVKEQINQATVEI
VYKPKSGMANCAEKLKENLICSTCETAILACLHPRSSISITIQELQNSGSLLACAINVVC
LSLLDASINMNFMMAAVSCVFTENDQLILDPTIKEESSAPISMMFVFDSVSKSILAIHTS
GLFDKTKFNSALVACRAASDEIFTFYREIMQKNFSKS
NT seq
654 nt
NT seq
+upstream
nt +downstream
nt
atgaatggagaaataaaaaaacagcagttacggaagatgtcttgtgaactgagtcttttg
tcaagaccagatggttcagccagtcttagttgtggtgatacttcaatgatggcctcagta
tatggcccagctgaagtgaaaattgttaaagaacaaatcaaccaagctacagtagaaatt
gtatataaacctaaatcaggtatggctaattgtgcagaaaaattaaaggagaatttaata
tgcagcacctgtgagacagcaatcttggcctgtttacatccacgttcttctattagtata
actattcaagaacttcagaattcagggtccctattagcttgtgcaataaatgttgtttgt
ctctcattattagatgcgagtattaatatgaacttcatgatggcagctgtatcttgtgtc
ttcacagagaatgaccaacttattttggacccaacaataaaagaagaaagctctgcacca
atatcaatgatgtttgtatttgacagtgtctctaaaagcattcttgctatacatacatct
ggattatttgataaaacaaaattcaactcagctttggtagcctgcagagcagcttcagat
gagatctttactttttacagggaaattatgcaaaaaaatttttctaaatcatag
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