Octopus bimaculoides (California two-spot octopus): 106883380
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Entry
106883380 CDS
T04127
Name
(RefSeq) TNF receptor-associated factor 6
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
obi
Octopus bimaculoides (California two-spot octopus)
Pathway
obi04120
Ubiquitin mediated proteolysis
obi04140
Autophagy - animal
obi04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
obi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
106883380
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
106883380
04140 Autophagy - animal
106883380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
obi04131
]
106883380
04121 Ubiquitin system [BR:
obi04121
]
106883380
Enzymes [BR:
obi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
106883380
Membrane trafficking [BR:
obi04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
106883380
Ubiquitin system [BR:
obi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
106883380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-TRAF
TRAF-mep_MATH
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_4
zf-C3HC4_2
zf-Nse
zf-RING_2
zf-RING_5
TRAF3_RING
zf-C3HC4_3
Dot_icm_IcmQ
KxDL
Motif
Other DBs
NCBI-GeneID:
106883380
NCBI-ProteinID:
XP_052825372
EnsemblRapid:
LOC106883380
LinkDB
All DBs
Position
7:43153442..43186949
Genome browser
AA seq
415 aa
AA seq
DB search
MMSHTFDEEFELSLKNVNQRFICPICLALMSKPMQTKCGHRFCKKCIFGVIAGRDRVKCP
VDNNFFWVQSDSHVTNCQFVFINCELCGKDVLSKTFVTHKNIDCPCRSVLCELCEEEVPY
NNKLKHQVLSCELFPVGCPQCGQKDIQRKDIAQHIDQASGHCPLTLISCQYHPFGCTHMD
YRKNMSYHISHAVEYHNVLLMKFLQNLEKRLESIEQNFDSNINLSSNISNKIEQMQRAIS
MRDTVQNIFKEKYSGCLLWQIDLNSNGCVFISPSFYTANPGYRIEAQLDISGCQDSILYI
TFSLSLKEGMYDDVLVFPFSGACLVTVFDQMASNCKENYSLFIECSQLQRYNENCPGSSP
FQVCHKLMKAEDFFSPRYIKNKTVFLEVKVMQAVQSQSQVKYSLMNQKNHSYLRQ
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcacacacttttgatgaagagtttgaattaagtttaaagaatgtaaatcagaga
ttcatttgtcccatctgtttagctttgatgtcgaaaccaatgcagacaaaatgtggccat
cgtttctgtaagaaatgtatttttggtgttattgcgggtcgtgatcgagtaaaatgtcca
gtagacaacaatttcttttgggttcaatcagattctcatgtcaccaactgtcaatttgta
ttcataaattgtgaactgtgtggtaaagatgtcctctcaaagacgtttgtgacacacaaa
aacatagattgtccttgtagaagtgttttgtgtgaactttgtgaagaagaggtaccatat
aacaataaattgaaacatcaagtgttgagctgtgagttatttcctgttggttgtccccag
tgtggtcagaaagatatccaaagaaaggacattgctcagcacattgaccaagcatctggc
cattgtcctcttacacttatttcttgtcagtatcatccatttggctgcacacacatggac
tatcgtaaaaacatgtcttaccacatatcacatgctgttgagtatcataatgttctgttg
atgaaatttctgcaaaatcttgagaaaagactcgaatccattgaacaaaactttgactcc
aatatcaatctgtcgtcaaacatcagcaataagattgaacagatgcaacgggccattagt
atgagagatactgttcaaaacatcttcaaagagaaatattctggctgtcttttatggcag
atagacctaaactcaaacgggtgtgttttcatcagtccatcattctacacggcaaaccct
ggatacagaatagaggcacagctggatatttctggttgtcaagattccattctgtatatc
actttctccctatccttaaaggagggtatgtatgatgatgtattagtgttcccgttctct
ggagcatgtcttgtcactgtttttgaccagatggcctccaactgcaaagaaaattacagt
ctgttcattgaatgttcacaattacagcgatacaatgagaactgtcctggttcctcccca
ttccaagtctgccataaattaatgaaggctgaggatttcttcagcccacgttacataaag
aataaaactgtctttttagaagtgaaagttatgcaagctgttcaatcacaaagtcaagtg
aaatatagtctcatgaatcaaaagaatcactcctacttgaggcaataa
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integrated database retrieval system