KEGG   Oryza brachyantha (malo sina): 102711553
Entry
102711553         CDS       T02995                                 
Name
(RefSeq) histone deacetylase 6-like
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
obr  Oryza brachyantha (malo sina)
Pathway
obr03082  ATP-dependent chromatin remodeling
obr03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:obr00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    102711553
   03083 Polycomb repressive complex
    102711553
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:obr03036]
    102711553
Enzymes [BR:obr01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     102711553
Chromosome and associated proteins [BR:obr03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     102711553
   HDAC complexes
    Sin3A-HDAC complex
     102711553
    BRAF-HDAC complex
     102711553
    REST complex
     102711553
    SHIP complex
     102711553
    MiDAC complex
     102711553
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     102711553
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    102711553
  Chromatin remodeling factors
   NuRD complex
    102711553
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 102711553
NCBI-ProteinID: XP_006659341
UniProt: J3MSC3
LinkDB
Position
8:9544324..9548381
AA seq 458 aa
MAASGEGASLPSQGGGEDARRRRVSYFYEPSIGDYYYGQGHPMKPHRIRMAHSLVVHYGL
HRLLELSRPYPASEADIRRFHSDDYVAFLASATGNPALLDARAVKRFNVGEDCPVFDGLF
PFCQASAGGSIGAAVKLNRGDADITVNWAGGLHHAKKGEASGFCYVNDIVLAILELLKFH
RRVLYVDIDVHHGDGVEEAFFTTNRVMTCSFHKYGDFFPGTGHISDIGIGEGKHYALNVP
LSDGIDDDTFRDLFQCIIKKVMEVYQPDVVVLQCGADSLAGDRLGCFNLSVKGHADCLRY
LRSFNIPMMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNDYYEYFGPDYNLHIQP
RSVENLNTTKELENMKTMILEHLSQIEHVPSTQFHDRPSDPEAPQEEEEDMDKRPPQRSR
LWSGGAYESDTEDPDNMKTETNDLSASSVMKDESNGDS
NT seq 1377 nt   +upstreamnt  +downstreamnt
atggcggcgtccggcgagggcgcgtcgctgccgtcgcagggcggcggggaggacgcccgg
cggcggcgggtgagctacttctacgagccgtcgatcggcgactactactacgggcagggg
cacccgatgaagccccaccgcatccgcatggcgcactcgctggtcgtccactacggcctc
caccgcctcctcgagctctcccgcccctacccggcctccgaggccgacatccgccgcttc
cactccgacgactacgtcgccttcctcgcctccgccaccggcaacccggccctcctcgac
gcccgcgccgtcaagcgcttcaacgtcggcgaggactgccccgtcttcgacggcctcttc
cccttctgccaggcctccgcggggggcagcatcggcgccgccgtcaagctcaaccgcggg
gacgccgacatcaccgtcaactgggcggggggcctccaccacgccaagaagggcgaggcc
tccgggttctgctacgtcaacgacatcgtcctcgccatcctcgagctcctcaagttccac
aggcgtgtgctatatgtagacattgatgtccaccatggagatggtgtggaggaagctttc
ttcactacaaatcgagtcatgacttgttcttttcacaagtacggggattttttccctggt
actggacatatcagtgatattggaataggcgaagggaaacattatgctttaaatgtgccc
ctgagtgatggtattgatgatgacacctttcgtgatctgttccagtgcatcattaaaaag
gtaatggaggtttatcagccagacgttgttgtactccagtgtggagcagactctttggct
ggagacaggttaggttgcttcaacctgtctgtgaaaggtcatgcagactgcctccgttac
cttaggtctttcaatattcctatgatggttttaggaggtgggggttacaccatcagaaat
gttgctcgctgctggtgctatgagactgcagttgctgttggagttgaacctgataacaag
ttaccttataatgactactatgagtactttggtcctgattataatcttcatattcaacca
agaagtgtggagaacctgaatacaactaaagagttggagaacatgaagaccatgatattg
gaacatctctcacaaatagagcatgttccaagcactcagtttcatgacagaccatcagac
cctgaagctccacaggaggaagaggaggacatggacaagagaccacctcagcgcagtaga
ttatggagtggaggagcttatgagtctgatacagaggatcctgacaacatgaaaactgag
acgaatgacttatctgccagctctgtcatgaaggatgaatcaaatggtgattcctag

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