Oryza brachyantha (malo sina): 102714648
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Entry
102714648 CDS
T02995
Name
(RefSeq) E3 ubiquitin-protein ligase UPL4 isoform X1
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
obr
Oryza brachyantha (malo sina)
Pathway
obr04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
102714648
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
obr04121
]
102714648
Enzymes [BR:
obr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
102714648
Ubiquitin system [BR:
obr04121
]
Ubiquitin ligases (E3)
HECT type E3
102714648
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
Arm
Adaptin_N
HEAT_EZ
Htt_N-HEAT_1
Motif
Other DBs
NCBI-GeneID:
102714648
NCBI-ProteinID:
XP_006655387
LinkDB
All DBs
Position
5:complement(15007026..15014746)
Genome browser
AA seq
1538 aa
AA seq
DB search
MDRCRKRPDSDGGASGEAEHPADKRPCTAEPSTSAAAVAGEGAGAEAVVAAAAGERACSD
MDTSSSGHAGDGDGEEDGDGDGDGEGEGDDDGDGDGGSSCESDGDGSPRRCGGGGGRFQR
MVAAVAAEGAEEGPLVAALTELCEALSFCGEDVGGYFPTEAAARALVRLVGATEGGVVAS
PDVMLLSVRAITYLCDTMPRASDAVVRHGLLPLLCSRLLAIEYLDVAEQCLQAFEKISRR
QPTPCLRAGMIAAVLTFIDFFSASIQRVAVSAVANVCKKVPKDCSQFVMDSMPMLCNLLQ
YEDKMVVEKVASCLISVVDSFNGSVELLDQLCHQGVIEKVLPLINTGGLTSLSPSTCSNL
IGLLAKLACNSLVAVKSLFELNAGSTISRILVTSDLSHGMPYLPLENQNNQVNEALKLAN
QLIPSAARDVEDTQMVHAKEKIIIDEPRFLCQFSMEILHVLIKAVNSGANSYICYGCASI
VNNICYFSKPEMLQDLLKDANIPSFLAGLLSRKDHHVLFSSLKLIEILMQKLPDAYLGSF
IKEGVVYAVEALLVQDDCSKSTDLSDETQQSENQPVIRNKPTCFCYAFDYPRSDAAETRI
CMIGKGNLFTFARHVKTSYFTAEAVNSEMGLTEILQKLKTCCAVLNDSADKSLNQDNLQN
EEHLTNILSEVMMELHGGETMTTFEFLESGLVKSLSNYLSNGKFLQTEGNPNDYNTEHVL
AVLKRFQSFAHISFSRMEQHWGDMLLTLLVRKLQNALTSLDNFPVIMSHNFKPRNTISDI
PTRHSTITPCIRVRFKKDEDQINLSNYNNVVNVEISSSLHTIEEFLWPKICTDTSNQKAE
SSSNAVASEKKYSEDDLQKRDFTPESSPTREGDISGNQNLSVEPGSDKGPSSSGAVQQET
SASDHTAQPKLLFSLKGKNLDQSITLYQSILQDQINAGSDIILDNQFWRIVHDVTYRTVN
PKVDYSLKNSSCATTSANDSKAGFTWQALPFFSSLLLGKLPCKLDRSSPSYDILFMLKIL
EGLNRYSFHLVSDERNHTFVHGGITNLDDLKADVSLVPQQEFASAKLTDKLEQQLHDPLV
LRSRCLPLWCTELMSACPFLFSFEARWKYFQLTAFGSLTPQHGNMMDTSGSGIIIERVPS
FSRKKFKVDRDNILASAAKVMQSHAWGNALLEVEYKEEVGTGLGPTMEFYTLISHEFQKS
GLGMWRGDIPCETGPDIAHGGSGFVVAPNGLFPKPWSIHVDCSSFSEVDKQFHLLGQVVA
KAIKDSRILDIPFSKAFYKLILGQELNLYDIHSFDPELAMTLMEFKAVAARRKYLESSSS
GDCKSTSDLSYRGCKIEDLAIVFALPGYPEYVLSPESSLKNVNADNLEQYVSFVVDATVR
TGIARQLEAFKSGFNEVFPLSTLQVFSEDELERLLCGEQDTWDFTKLVDHIKFDHGYTSS
SPPVINLLEIVQEFGCNQRRAFLQFITGSPRLPPGGLAALNPKLTVVRKHNSNEADDDLP
SVMTCANYLKLPPYSSKDKMREKLLYAITEGQGSFHLS
NT seq
4617 nt
NT seq
+upstream
nt +downstream
nt
atggatcgctgccggaagcggcccgactccgacggcggagcttctggggaggcggagcac
cccgccgataagcggccctgcactgcggagccgtcgacctcggctgctgccgtggcgggg
gaaggggcgggggcggaggctgtggttgcggcggcggcgggggagcgcgcctgctcggat
atggacacgtcgtcgtctggccacgcaggcgatggggatggggaagaggatggtgatggg
gatggggatggggaaggggaaggtgacgatgatggggatggggacggggggtcgtcgtgc
gagtcggatggggacgggagcccgaggaggtgcggaggcgggggagggaggttccaacgg
atggtggcggcggtggcagcggagggcgcggaggaggggccgctggtggcggcgctgacg
gagctctgcgaggcgctctccttctgcggggaggacgttgggggttacttccctacggag
gccgcggcgcgggcgctggtgcggctggtgggggccaccgagggtggcgtggtggctagc
cccgacgtgatgctgctctccgtgcgcgccatcacatacctctgcgacacgatgccacgc
gcttccgacgctgtcgtccgccacggcctgctccctttgctctgctcccgtcttctcgcc
atcgagtaccttgatgttgctgagcagtgcttgcaagcattcgagaagatatcgcggagg
caaccaacgccgtgcttgcgggctggcatgatcgctgctgtgctcacattcattgacttc
ttctctgcaagtattcagagggttgcggtctcagctgtggcaaatgtctgtaagaaggtc
cccaaagactgctcccagtttgtgatggattctatgccaatgctgtgtaatctactgcag
tatgaggacaaaatggtggtggagaaggttgcaagttgcttgataagcgttgtggattca
tttaatggttcagtggagcttctcgaccagttgtgtcaccagggtgtgatagagaaagtc
ctgccactgatcaacactggtggactaacttctcttagcccatcaacatgcagtaacttg
attgggcttcttgctaagttagcctgtaattcactggtggctgtgaagtctctctttgag
ctgaatgctggtagcaccataagtagaattttggttacttcagatctctcacatggcatg
ccttacctgcctttggaaaaccaaaacaaccaggtcaatgaggctctgaaactagcaaac
caacttattccttctgcagcaagagatgttgaagacactcagatggtacatgcaaaagaa
aaaataattatagatgaaccaaggttcttatgtcagttctctatggagattcttcatgtc
ttgatcaaggcagtcaactctggtgcaaattcatacatttgctatggatgtgcttcaatt
gtaaataacatctgttatttcagtaaacctgaaatgcttcaagatttgctcaaggatgca
aacatacctagtttcttggctggtttattgtctcgtaaggatcatcatgtgctattctca
tcactaaagcttatcgaaattctcatgcaaaagcttcctgatgcttaccttggatctttc
atcaaggaaggtgtagtctatgcagttgaggctcttcttgtgcaagatgattgctcaaaa
tctactgatctctctgatgaaactcaacaatcagagaatcagcctgtcataagaaataag
ccgacatgtttctgctatgcatttgattatcccagatctgatgctgctgaaacaaggatc
tgcatgattggaaagggcaacctatttacttttgcaaggcatgtgaagacaagctacttc
actgccgaagcagtgaactctgagatggggttgacggagattttgcaaaaactcaaaact
tgctgcgcagttctgaatgattctgctgataagtcattaaaccaagacaatctccaaaat
gaagagcacttgactaacattttaagtgaggtgatgatggagcttcatgggggagaaaca
atgactacctttgagttccttgagagtggattggtcaaatctttgtctaattacctctcc
aatggcaagttcctccaaacggaggggaatccaaatgattacaatactgaacatgttctt
gccgtgctaaaaagattccaatcatttgctcatatatccttttcaagaatggagcagcac
tggggcgatatgctcttgacactgttagtaaggaaactacagaatgctcttacctccctt
gacaacttcccagtgataatgagccataatttcaagccaaggaacactatttcagatatc
cctactaggcactcaacaattactccatgtatccgagtacgatttaagaaggatgaagat
caaatcaacttgtcaaactataataatgttgttaatgtggaaatctcttcctcattgcac
actattgaagagttcttgtggcccaaaatttgtacagacacaagcaatcagaaggctgaa
tcatcatccaatgctgttgcttctgaaaagaaatattctgaagatgacctacagaaaaga
gatttcacacctgaatcatccccaacacgcgagggagatataagtggaaatcaaaattta
tctgtagagccaggctcggataaagggccttcatcttctggtgcagtccaacaagagaca
agtgcaagtgatcatactgcacaaccaaaattgttatttagcttgaaaggaaaaaatctt
gaccaatctattactctgtatcaatcaatcctgcaggatcagataaatgcaggctctgac
ataattttggacaaccagttttggcgcattgtgcatgatgtaacctatagaactgtgaat
ccaaaagtagattattctcttaagaattcatcttgtgctacaacatcagcaaatgacagt
aaagctggatttacgtggcaggcactccctttcttcagtagcctgttgcttggcaagctt
ccttgcaaacttgacagatcaagtccatcatatgacatattatttatgctaaaaattctg
gagggactaaaccgatactcttttcaccttgtgtctgatgagagaaaccacacttttgta
catggaggcataactaaccttgatgatctgaaagctgatgtttctttagttccacagcag
gagtttgccagtgctaaattgacagataaactggagcaacagttgcatgatcccttggtt
ttaaggtctcgctgcctgcctttatggtgcactgaactgatgtctgcatgtcccttcttg
ttttcttttgaggcaagatggaagtattttcagttgacggcatttggttcattgaccccg
caacatgggaatatgatggatacaagtggtagtggtataataatagaaagggtgccatcc
ttctcacggaaaaagttcaaagttgaccgtgacaatatactggcatctgctgctaaagtg
atgcaatcacatgcctggggtaatgcactgctcgaagtggaatataaagaggaagtaggc
actggtttaggtcctacgatggaattctatacactgataagtcatgagtttcagaagtcc
ggtttaggcatgtggagaggggacattccctgtgaaactggcccggatattgctcatggt
ggttctggatttgtggttgcccctaatggactttttcctaaaccatggtctatccatgtg
gattgttcttccttctcagaagtggataaacaattccacctccttggtcaggttgttgca
aaggcaattaaagacagcagaattctcgacattccattttctaaagcattttataagctt
atactagggcaggaacttaatctatatgacattcactcatttgatcctgaactagcaatg
acccttatggagtttaaagcggttgctgctcggagaaaatatttagaatcaagttcgagt
ggggactgtaagagtacatctgatttgtcttatcgaggttgcaagattgaggatcttgct
attgtgtttgctcttccaggatatccagaatatgttctttctccagaaagtagcttgaag
aatgtaaatgctgacaatttagaacagtatgtttcttttgttgttgatgcaacggttaga
actggaatcgcaagacagctggaagcatttaagtcaggattcaatgaggtatttccacta
agcaccctccaggtcttctcagaggatgaactggagcgattactctgtggtgaacaagac
acttgggatttcacaaaacttgtggatcacataaagttcgatcatggctacacttccagc
agccctcctgtcattaatttgttggagattgtacaggagtttggatgcaatcaacgaaga
gctttcttacagtttataacaggttcacctcgactcccaccgggtgggttagctgcacta
aatccaaaactgacggttgtccgaaagcataacagcaacgaggctgatgacgacctgcca
agtgtgatgacttgcgctaattacctaaagttacccccctattcttccaaggacaagatg
agggagaaactactctacgcaatcacggaaggccaggggtctttccacctatcttga
DBGET
integrated database retrieval system
