KEGG   Oligotropha carboxidovorans OM5 (Mississippi): OCAR_6912Help
Entry
OCAR_6912         CDS       T00783                                 

Definition
(GenBank) ATP dependent DNA ligase
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
oca  Oligotropha carboxidovorans OM5 (Mississippi)
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:oca00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    OCAR_6912
Enzymes [BR:oca01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     OCAR_6912
DNA repair and recombination proteins [BR:oca03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     OCAR_6912
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
2872611..2875280
Genome map
AA seq 889 aa AA seqDB search
MTRKKLSVYQTKRDFTKTAEPSGAAKVTRGKLPRFVIQKHDATRLHYDLRLEIDGIFKSW
AVTRGPSLDPKDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGFWHSDDPAGGL
KKGDLKFTLEGKKLHGEWVLVRMRHDRTGGKRTNWLLIKHRDEAAREGEDILDQDRSVAS
GRTMEQIAQGKGRGPTPFMTAKGNAKPSRSKADRVWQSNQGTAAALRAKSVAKTKTLAKP
VQAAVRKVDHLPEFIAPQLCKSVARPSDGADWIHEIKFDGYRMQLHIQGGKVHLRTRKGL
DWTDKFPAIAKAAAKLPECIIDGEIVALDHEGHPSFASLQAALSDGDTDELIFFAFDLLF
DKDSDLRRLPLTERKARLEQLLDRQSKTSVIRYVAHFDTGGDAVLKSACRLALEGIISKR
RDALYHSGRTESWTKAKCRAGHEVVIGGWKTTAGKFRSLMVGVPHEDHLAYVGIVGTGYG
QAVVKRIMPELKKVASTTNPFGGKNAPRKTTGVHWVKPELVAEIEFAGWTGDNMVRQAAF
KGLRKDKSADEVQVDEPVVTPIAEPAPRKTNTKANTKTRAKAATRTSSSGNAVVMGLTIS
KPDKPLWPDDGKGEPVTKLDLARYMETMGEYLLPHIEGRPCSIIRAPDGIEGEKFFQRHA
TAGMSNLIDQVRVSGDRKPYIQIDRIEGLVAAAQIGGVEFHPWNCAPNEPDVPGRLVFDL
DPAPGVNFTDVITAARDLHDRLSSLGLESFCKTTGGKGLHVVTPLKDAKKDRIDWKAAKA
FAQAVCQAMAADAPERYLINMSKKKREGKIFLDYLRNDRMSTAVAPFSPRGRDFAPVAWP
ITWAQARTGLDPLKFTLRTVPALVKTSKAWAGYDRAARSLKDAIRKMGG
NT seq 2670 nt NT seq  +upstreamnt  +downstreamnt
gtgacccgtaaaaagctctccgtctaccagaccaaacgcgacttcacgaaaaccgcggag
ccctccggcgctgcaaaagttacgcgtggaaagttgccgcgtttcgtcatccagaagcac
gatgcgacgcgactgcattacgatcttcggctcgaaatcgacggcatcttcaaatcatgg
gcggtgacgcgcggcccctcgcttgatccgaaggacaagcgcctcgccgtcgaggtcgag
gatcatccgctcgactacggcgatttcgagggcacgattccgaaaggccagtatggcggc
ggcacagtgatgctgtgggaccgcggcttctggcacagcgacgatcccgcaggcggccta
aagaagggcgatctcaaattcacgctggagggcaagaagctgcacggcgagtgggtgctg
gtgcggatgcgccatgaccgcaccggtggcaaacgcaccaactggcttctcatcaagcat
cgcgacgaggccgcgcgcgagggcgaggacattctcgatcaggatcgctcggtcgcatcc
ggccgcacgatggagcagatcgcgcaaggcaagggccgcgggccgacgccgttcatgacg
gcgaagggaaacgcaaagccaagccgctccaaagccgaccgcgtctggcaatcgaaccag
ggcacagcggcggcattgcgcgcgaaatcggtggcaaaaacgaagacgctggcaaagcca
gtgcaggcagccgtgcgcaaggtcgatcacctgccggaattcatcgcaccgcaactgtgc
aagtccgttgcccgcccgtccgatggcgcggactggattcacgaaatcaagttcgatggc
taccggatgcagttgcacatccaaggcggcaaggtgcacttgcgcacgcgcaagggcctc
gactggaccgataagtttccggctatcgccaaggcggccgccaagctgccggagtgcatc
atcgatggcgagatcgttgcactcgaccacgaggggcacccgagcttcgcctcgctgcag
gcggcgctatctgatggcgacaccgatgaactgatcttcttcgcgttcgaccttttgttc
gataaagacagcgacctgcgccgcctgccgctcaccgagcgcaaagcgcggctggaacag
ttgctcgaccgccagagcaaaaccagcgtcatccgttatgtcgcgcatttcgacaccggc
ggcgacgcggtgttgaagtcggcctgccgtctcgcgctcgaaggcatcatctccaagcgg
cgcgacgcgctctatcattccggtcgcaccgaaagctggacaaaagcaaagtgtcgcgcg
gggcacgaggttgtcatcggcggctggaaaaccaccgcgggcaaattccgctcgctgatg
gtcggcgtgccgcatgaggatcatctcgcttatgtcggcatcgtcggcaccggttacggt
caggccgtcgttaaacggattatgccggagttgaagaaggtggcttcgacgacaaatccg
ttcggcggcaagaacgcgccgcggaaaacgacgggcgtgcactgggtcaaacccgagctt
gtcgccgagatcgagttcgccggctggaccggtgacaacatggtgcggcaggccgcgttc
aaaggcctgcgcaaggataagtcggcagacgaagtgcaggtcgacgaaccggtcgtcacg
cccatcgccgaacccgcaccacgcaagaccaacaccaaggccaatacgaagactcgcgcg
aaagctgccacacgcacgtcctcctccggcaacgccgtggtgatgggcctcaccatttcc
aaaccggacaaaccgctctggccggacgatggcaaaggcgagccggtcaccaagctcgat
ctcgcccgctacatggagaccatgggcgaatatctgctcccgcacatcgaagggcggccc
tgctccatcatccgcgcgccggatggcatcgagggcgagaagttttttcagcgtcacgcc
acggccgggatgtcgaacctgatcgatcaggttcgcgtctccggcgaccgcaagccttac
atccagatcgatcggatcgaagggcttgtggcggcggcgcagatcggcggtgtcgaattc
catccgtggaattgcgcgccgaacgaacccgatgtgccgggccgtctggtgttcgatctc
gatcccgcgccgggcgtcaactttaccgatgtcatcaccgccgcgcgcgatctgcatgat
cggttgtcgtcgctcggactcgagagcttctgcaagaccaccggcggcaagggcctgcat
gtggtcacgccgttgaaggatgcgaagaaggatcgcatcgactggaaagcggcgaaggcc
tttgcacaggcggtctgtcaggcgatggcggcggatgcgccggagcgctatctcatcaac
atgtcgaagaagaaacgcgagggcaaaatcttcctcgactatctgcgcaacgaccgcatg
tcgacggcggtcgcgccgttctcgccgcgcgggcgcgacttcgctccggtggcatggccg
atcacctgggctcaggcgcgcacgggcctcgatccgctgaagttcacgctacgcaccgta
cccgcgctggtgaagacatcgaaggcgtgggccggttacgaccgcgccgcgcgctcgctg
aaagatgcgatccggaaaatgggtggctga

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