Oceanobacillus sp. 143: CV093_03225
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Entry
CV093_03225 CDS
T06339
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ocb
Oceanobacillus sp. 143
Pathway
ocb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CV093_03225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocb03019
]
CV093_03225
03009 Ribosome biogenesis [BR:
ocb03009
]
CV093_03225
Enzymes [BR:
ocb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CV093_03225
Messenger RNA biogenesis [BR:
ocb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CV093_03225
Ribosome biogenesis [BR:
ocb03009
]
Prokaryotic type
rRNA helicases
CV093_03225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QGS68038
LinkDB
All DBs
Position
602428..603903
Genome browser
AA seq
491 aa
AA seq
DB search
MTTFKEIGVSAPVMKALEKMGFEEATPIQAETIPLALDGHDVIGQAQTGTGKTAAFGIPM
IEKFDSKLRKIQGLVVAPTRELAIQVAEEINRLAKFKGVRALAIYGGSPMDRQIRALKDG
PQIVVATPGRLLDHMRRRTIHIENVQVAVLDEADEMLNMGFIDDIRDILKGIPEERQTLL
FSATMPREIRDIASKLMKEPKEVKVKSKEMTVENIDQFFIEIPEKYKFDTLNNHLDINSP
ELAIVFARTKKRVDEVTEGLQARGYRAEGIHGDLTQGKRMSVLNKFKGGRLDVLVATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGRTGEAISFITPREIAHLHLIEKVTN
SKMKRLMPPTNQDAQRGQQQVAIDKLQKTIDKQDLKSYHEAANELLQDNDSITVIAAALK
LLTKERRDTPVRISSVAPISVKKAHGSDKRRSNNNRYGGRNQGSRNQGGGRNQSGGRNRK
GNFQKRRNRDQ
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
ttgacaacatttaaagaaataggtgtttcagcacctgtcatgaaagcattagaaaaaatg
ggatttgaggaagcaacaccaattcaagcagaaacaatcccacttgcacttgatggacac
gatgtaatcggacaagcacaaacaggtacaggtaaaacagcagcatttggtattccaatg
atcgagaaattcgattcaaaattaagaaagatccaaggtttagtagtggcccctacaaga
gagcttgcaattcaggttgcagaagaaataaaccgactagcaaaattcaaaggtgttcgt
gcattagcaatttacggtggatcacctatggaccgccaaattcgtgcattaaaagatggc
ccacaaattgttgtagcaacaccgggaagattgcttgaccatatgcgcagaagaacgatt
cacattgagaacgttcaagtagcggtactagacgaagcggatgaaatgctaaacatggga
ttcattgatgatattcgtgatattcttaaaggaattcctgaagagcgtcaaacattatta
ttctctgctacaatgccaagagaaatccgtgatattgcttctaagttaatgaaggaacca
aaagaagttaaagtaaaatcaaaagagatgactgtagagaatattgatcaattcttcatc
gaaattccagagaagtacaaattcgatacgttaaataatcatttagatattaattcaccg
gaactcgcaatcgttttcgctagaacgaagaagcgtgttgatgaagttactgaaggatta
caagcaagaggataccgtgcagaaggaatccatggcgatttaacacaaggcaaacgtatg
tctgttctaaataaatttaaaggcggacgcttagatgtattagttgcaacagatgttgct
gctcgtggactggatatttctggtgtaactcacgtttataattttgatattccacaggat
ccagaaagctatgtacaccgaattggacgtacaggtcgtgctggacgtacaggagaagca
atttcatttatcacaccaagagaaattgcgcatttacacttaattgagaaagttacgaat
agtaaaatgaaacgattaatgcctcctactaaccaagacgctcaaagaggccaacaacaa
gtagcgattgataaactgcaaaaaacaatcgataaacaagatttaaaatcatatcatgaa
gcggcaaatgaattattacaagataatgattcgattactgtcattgcagctgcattgaaa
ttattaacaaaagaacgcagagatacccctgttagaatttcttcagtagcaccaattagt
gtgaagaaagcacatggctctgataaacgtcgttcaaataataatcgttatggtggacgt
aaccaaggttctagaaatcaaggcggcggacgaaaccaaagtggaggaagaaaccgcaaa
ggaaacttccaaaaacgcagaaatcgcgatcaataa
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