Oceanicola sp. D3: FHY55_17040
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Entry
FHY55_17040 CDS
T06139
Name
(GenBank) UdgX family uracil-DNA binding protein
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
ocd
Oceanicola sp. D3
Pathway
ocd03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ocd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
FHY55_17040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ocd03400
]
FHY55_17040
Enzymes [BR:
ocd01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
FHY55_17040
DNA repair and recombination proteins [BR:
ocd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
FHY55_17040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4130
UDG
PPS_PS
Motif
Other DBs
NCBI-ProteinID:
QDC10835
UniProt:
A0A5B8BYT2
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All DBs
Position
3421567..3422982
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AA seq
471 aa
AA seq
DB search
MLTVRLPKIGSIAAWRSEARRLAAEGVPAEHVRWTQDDAQDLFASTDAPRAAPVEIRLSK
QALFDIESSLYHRDPQRFARAYALVLRLGRGEIRWGDRADDTLRKLLHQRKEVGRDIHKM
HAFVRFNEVTPKGANRRAFAAWFEPDNPITEAAAPFFAKRFGDMDWVIATPTLTARFIAG
ALSFEETAEHTRPPEDASHDLWRTYYANIFNPARLMPEAMRSEMPKKYWKNLPEARLIPE
LIRTAPARAAEMQAKMPSIPPAFAAKAVATRAPMPEGITPDTIKQHLDACTRCPIGCRAT
QGVPGEGPLTARLMVVGEQPGDAEDLSGKPFTGPAGQLFDSCAAKAGLDRRQTYVTNAVK
HFKFTPRGKRRLHQRPDADEIEHCKWWLDLERDWVKPRLILAMGATPALALTGSSRNITR
RRGTIEHTPEGTPVLLTSHPSYLLRLPEAQARQEAEARFTADLARAVQICA
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgctcactgtgcggctccccaaaatcggttccatcgccgcatggcgcagcgaggcgcgc
cgcctcgcggcagagggcgtgcccgctgaacacgtccgctggacgcaagacgacgcgcaa
gatctcttcgccagcaccgatgccccgcgcgccgcgccggtcgaaattcgcctttcgaaa
caagcccttttcgatatcgaaagcagcctctaccaccgcgaccctcagcgcttcgcccgt
gcctacgccctcgtcctccgccttggccggggcgagatccgctggggcgaccgcgccgac
gacacgctgcgcaaactcctgcaccagcgcaaggaggtgggccgcgacatccacaagatg
catgccttcgtccgcttcaacgaggtcacgccaaaaggggccaaccgccgcgccttcgcc
gcatggttcgagcccgacaacccaatcaccgaggccgccgcgcccttcttcgccaagcgc
ttcggcgatatggattgggtcatcgccacgcccaccctcaccgcccgcttcatcgcaggc
gcgctctccttcgaagaaaccgccgaacacacccgcccccccgaggacgccagccacgac
ctctggcgcacctactatgccaacatcttcaacccggcgcggctgatgcccgaggcaatg
cgctcggagatgcccaagaagtattggaagaacctccccgaggctcgcctcatccccgag
ctgatccgtaccgcccccgcccgcgccgccgagatgcaggccaagatgccaagcatcccg
cccgccttcgccgccaaggccgtcgccacccgagcgccgatgcccgagggcatcaccccc
gacacgatcaaacagcacctcgacgcctgcacccgctgccccatcggctgccgcgccacc
caaggcgtccccggcgaggggccacttaccgctcgcctcatggtcgtgggcgagcagccg
ggcgacgccgaagacctctccggcaagcccttcaccggccccgccgggcaactcttcgat
agctgcgccgccaaggccgggctcgaccggcggcaaacctacgtcaccaacgcggtcaaa
cacttcaaattcaccccgcgcggcaagcgccgcctccaccagcgccccgatgcggatgag
atcgaacattgcaaatggtggctcgacctggagcgcgattgggtcaaaccccgcctgatc
ctcgccatgggggccacgcctgccctcgccctcaccggctcatcccgcaacatcacccgg
cggcgcggcacgatcgaacacacgccagaaggcacccccgtgttgctcaccagccacccg
agctacctcctgcgcctccccgaggcccaggcccgccaagaggccgaagcccgcttcacc
gccgatctcgcccgcgcggtgcaaatctgcgcctga
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