Oceanisphaera avium: CBP12_08855
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Entry
CBP12_08855 CDS
T04855
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
ocm
Oceanisphaera avium
Brite
KEGG Orthology (KO) [BR:
ocm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocm03019
]
CBP12_08855
Enzymes [BR:
ocm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CBP12_08855
Messenger RNA biogenesis [BR:
ocm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CBP12_08855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
AAA_22
AAA_19
COX4
Motif
Other DBs
NCBI-ProteinID:
ART80244
UniProt:
A0A1Y0CZ07
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All DBs
Position
complement(1920524..1922965)
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AA seq
813 aa
AA seq
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MSSLPIAHVLPELKAALNAAHIILEAPPGAGKSTGLPLWLLAQPELVGRIILLEPRRLAA
RTIAQYLANQLGEELGNQVGYRMRGESRVSSTTRLEVVTEGVLTRMLQADPELSGVDLLI
FDEFHERSLQAELALAFALESQQLRDDLGILVMSATLEGLALDELLPNAVVIKSQGRSFP
VTVSYQPRNLQQPLDESMGRAIVAALEEHSGSVLAFLPGEREIADTLRWLQHHGLAARDE
VELRPLYGRLSLAEQRRAISACAAGRRKVVLATNVAETSLTIEGISIVVDSGLERRAEYE
PQSDISRLTTRFISQGSATQRAGRAGRMQPGWCVRLWSEEQQPRLAQRRPAEIELSCLTR
FVMECAAWGCAPEQLALLSAPPAALLAAARQQLSALGLLNADKLTALGQQVWRLGSEAPL
GLLLVNAKAWQAQGKAGALADGVYLVSLLEEHRLDNGPLSGQILAQQSALKKTALRWFKR
LNATPSLPSTQHVGALLASVYPQRVALLRNAQRYGLANGLTASLPLASPLSGKELLAVAD
LSKNDNGVIIQASEPITFAQLEEAAASYFSERAYLVWDDEANRVRAEQQACFGNLILKRT
PLTNLSGEQKAQCLLAELQKRGWQALPLDEQSQQYWLRLKLAGQKLADHGFSPADEKHWL
ARAELWLLPYLMGLSRWEELSRLPWLQIFKAQLDWSQQQLLDTLLPGSLTLATGTQVRIR
YRAEQDPVLPVRLQEMFGRSDSPQLAQGRVSLVLELLSPARRPLQITRDLAAFWAGSYED
VKKEMRGRYPKHHWPDNPATTAPTQYTKRHNKH
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atctcgtcgctgcccatcgcccacgtgctgccagaattaaaggcggccttaaatgctgcg
cacattatcttagaagctccgcctggggcgggtaagtctacgggcttgccattatggttg
ttggcgcaacctgagcttgtagggcgcattattctattggagccaaggcgcttggcggct
cgtactattgcccaatatttggcgaatcaactgggggaagagctgggtaaccaagtaggt
tatcgcatgcgcggcgagagtcgagtgagtagtacaacgcgcttagaagtggtgaccgaa
ggggtgctgacccgtatgctacaagcggatcctgagctgagcggtgtggacttactgatt
tttgatgagtttcatgaacgtagtctacaagcggaattggctcttgcctttgcccttgaa
agccagcagttacgcgatgaccttggtattttagtgatgtctgccaccctagaaggcttg
gcgttggatgaactattacctaatgccgttgttattaaaagccaaggacgtagttttccg
gtcactgttagttatcagccgcgcaatttgcagcaacctcttgatgaaagcatgggcaga
gctattgtagcggccttggaagagcactcgggtagcgtattggcttttttaccgggagag
cgcgaaattgccgatacgctacgctggctacaacatcatggtttggcggcccgtgatgag
gtggagcttaggcctttatatggccgattaagtttggccgaacagcggcgagccattagc
gcctgtgcagcggggcggcgcaaagtggtgttagccaccaatgtggcagaaacctcactc
acgattgagggcattagcattgtggttgactcaggtttggaacgtcgcgctgagtatgag
ccgcaatcagatattagccgcttaaccactcgctttattagccaaggctcggctacccaa
agagcagggcgcgctgggcgcatgcagcccggatggtgtgtgcgtctatggtccgaagag
caacagcctcgcttagcccagcgccgccctgcagagattgaactcagttgtcttacccgc
tttgtgatggaatgtgccgcatggggctgtgcccctgaacaattagcactgctcagtgcg
ccgcctgctgctttgctcgctgcggcccgccaacaattaagcgcactaggcttattaaac
gccgataagctcaccgcattaggccaacaagtatggcgtttaggcagcgaagctcccttg
ggcttgttgctagtgaatgcaaaagcgtggcaagcacaaggcaaggcaggggcgttggcc
gacggtgtttatctagtcagcttattagaagagcatcgcttagataacggccctttgtct
gggcaaattttagcgcagcaaagtgcacttaaaaaaaccgctctgcgttggtttaagcgc
ttaaatgctacacctagtctgcctagcactcagcatgttggagcattactagccagtgtt
tatccgcaacgagtggcgctacttcgcaatgcccaacgatatggcttagccaatggttta
acggccagcttgcccctcgccagtccgctaagcggtaaagaattattagccgtggccgac
ttaagtaaaaatgataatggcgtaataatccaagcgagtgagcccataaccttcgctcaa
cttgaagaagccgcagcgagctatttttctgagcgagcctatttagtgtgggatgatgaa
gctaaccgggtgcgggccgagcaacaagcctgttttggtaacttaattttaaagcgtacg
cccttaactaacctaagtggcgaacaaaaagcccagtgtctattagcagagctccaaaaa
cgagggtggcaagcgctgcctcttgatgaacagagtcagcaatactggttgcgattgaag
ctggcaggacaaaaactggccgatcatggcttttctcccgctgatgaaaaacactggttg
gcaagggccgagctgtggttattgccttatttgatggggcttagtcgttgggaggagtta
tcacgactgccttggctgcaaatatttaaagcacaactggactggtcacaacagcaattg
ctggatactctgctacccggctcactgacgctcgcgactggcactcaagtgcgaattcgc
tatcgagcagagcaagatccggtgctgccggtgcgcttacaagaaatgtttggccgctct
gatagccctcagctagcacaaggtcgagtgtctttagtgcttgagctgttatcgcccgct
cggcgaccactacaaattactcgagatctggcagcattttgggccgggtcttatgaagat
gttaaaaaagaaatgcgggggcgctaccccaaacaccactggcctgataatccagctacc
acagcgccaacccagtataccaagaggcataataagcactga
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