Oceanobacillus zhaokaii: CUC15_16200
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Entry
CUC15_16200 CDS
T05570
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ocn
Oceanobacillus zhaokaii
Pathway
ocn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ocn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CUC15_16200 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ocn03400
]
CUC15_16200 (ligD)
Enzymes [BR:
ocn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CUC15_16200 (ligD)
DNA repair and recombination proteins [BR:
ocn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CUC15_16200 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AXI10382
UniProt:
A0A345PK52
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All DBs
Position
3252139..3253935
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AA seq
598 aa
AA seq
DB search
MEIMKPVIRSEIPLGDEWIYEIKYDGFRCVLEWAADGTVLLKSRNNHDLTANFPEIESFC
LEITPAIKAFLPLVLDGELVILNHPYQTNFSQIQKRGRLKNKESIQKAARIRPAQLVVFD
LLELKGKSYRKQKLSTRKVGLESLFHRLKGDRLQLVETFQSPEAIEKAAFESKAEGIVAK
RTTGTYIAGKRHHDWYKIKNWRQIQVFLTAYDMKNDYFDVSVFQEQTVIGIGKCKHGLDA
DSFQTLKQLFLTNGKKQGQLYTLPPAVCASIHTLDLYKEELREPEFANLLPHIKPEECTI
EKLQLDLAMLPENINLTNTEKELWPDVQFTKGNLLTYMREVSPYMLPFLLNRLLTVIRCP
DGVDQEHFFQKHLPSYAPEFITAVPSKDGNAFICDRLESLIWFANHGAVEYHIPFQSAHS
SVPSEIAFDLDPPDRDHFHLAIHAAQLIKTLLDELNLTSFVKTSGNKGIQIHIPIREGSM
TYEETATFTQAIAFTIENTYSDYFTTERMKNKRNGRLYIDYVQHGKDKTLIAPYSPRKTK
DGTVATPLFWDEVKEGLDPGQFTIGNVIERVKQYGCPFADYFSFHSKQDMRKVLKLVR
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atggaaatcatgaagccagttattcgttctgaaattccacttggtgacgaatggatttat
gagataaaatatgatggattccgctgcgttcttgagtgggctgcagatggaactgtgctg
ttaaaaagtagaaataatcatgatttaactgctaacttccctgagatagaatcattttgt
ttagaaattactcctgctatcaaagcctttttgccactcgtacttgatggtgagctcgta
atattgaaccacccgtatcagaccaacttttctcagattcaaaaaagaggaagattgaaa
aataaagagtctatccaaaaggctgctcgaattcgccctgctcagctggtcgtatttgat
ctgctggaattaaaaggaaaatcctaccgcaagcaaaaattatcgactaggaaagttgga
ttagaaagcctgtttcacagactaaagggcgatcgtctccaactggttgagacgtttcaa
agtccagaagcaatcgagaaggcagcatttgaatctaaagcagaaggaatcgttgcgaaa
cggacaacaggcacttatatagctggaaagcgtcatcatgattggtataaaattaaaaac
tggcggcaaatacaagtattcctaactgcttatgatatgaaaaacgactattttgacgtt
agtgtgtttcaagagcaaactgtaatagggataggaaaatgcaaacatggactggatgca
gattcattccaaacattaaaacagctatttttgactaacggcaaaaagcaagggcagctc
tacacgcttccaccagcagtttgtgcatcgatacacacacttgatttatacaaagaggaa
ctgcgggaacctgaattcgctaatctattacctcatattaaaccagaggaatgcacgatt
gagaaattgcagctggatttggcaatgcttcctgaaaacatcaatttaacaaatacggaa
aaagaattatggcctgatgtgcagtttacaaagggaaatctccttacctatatgcgggaa
gtttctccttatatgctccctttccttctgaatcgattactaacggttattcggtgccca
gatggagtcgaccaggagcatttcttccaaaaacatttaccaagttatgcacctgaattt
atcactgctgttccgtccaaagatgggaatgcttttatttgcgatcgtttggaatctttg
atttggtttgcgaaccatggtgcagttgaatatcatatcccctttcaatcggcccatagc
tccgttccttctgaaattgcatttgatcttgatccgcctgacagggaccatttccatctc
gcaatccatgcggcacagctcataaaaaccttactggatgaacttaaccttacatccttc
gtaaaaacttcgggcaataaagggatccagattcacattccaattcgcgaaggaagcatg
acttacgaagagaccgcaacgtttacgcaagcaattgcatttacgattgaaaatacttat
tcggactattttacaacggagcgaatgaaaaataagcgaaacggcagattgtatattgac
tatgtacagcatggaaaagataaaacactaattgcaccttattcgccacgaaagacaaag
gatggaaccgtagcaacccctttattttgggatgaagtgaaagaaggattagatccgggg
caatttacaataggcaatgtgatcgaacgggtaaaacaatatggatgcccttttgcagat
tattttagttttcattccaagcaggacatgcggaaggttttgaaattagtgaggtag
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