KEGG   Oryctolagus cuniculus (rabbit): 100344941
Entry
100344941         CDS       T03373                                 
Name
(RefSeq) DNA ligase 3 isoform X1
  KO
K10776  DNA ligase 3 [EC:6.5.1.1]
Organism
ocu  Oryctolagus cuniculus (rabbit)
Pathway
ocu03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:ocu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    100344941
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ocu03400]
    100344941
Enzymes [BR:ocu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     100344941
DNA repair and recombination proteins [BR:ocu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     100344941
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N LIG3_BRCT zf-PARP DNA_ligase_A_C BRCT_2 RNA_ligase mRNA_cap_enzyme Synaptonemal_3
Other DBs
NCBI-GeneID: 100344941
NCBI-ProteinID: XP_002719278
Ensembl: ENSOCUG00000006305
LinkDB
Position
19:21932354..21961291
AA seq 1046 aa
MACVRLWPLTRWKPHPPLVPIYIRVCVCLTFSCSCMTVAFKILFPESLRALGRKELCLFR
EQHRWPDLKLFSWWSETDVLRGRCLLPRRKPVPSFGEGRLRARATCLVFLPGSHVGLCSG
PCEMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMF
EKLERARATTKKIEDLTELEGWEELEDNEKEQITQHITDLSSKAASTPKKKAVVQAKLTS
TGQVTSPVKGASLVTNPNPRKFSGFSAKPNNSGQNPPSSPAPTTSLSSSKCDPKHKDCLL
REFRKLCAMVADNPSYNTKTQIIQNFLRKGSTGDGFRGDTYLTVKLLLPGVIKSVYNLND
KQIVKLFSRIFNCNPDDMARDLEQGDVSETIRVFFEQSKSFPPAAKSLLTIQEVDEFLLR
LSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKHDLKMNSGAKHVLDALDPNAYEAFKA
SRNLQDVVERVLRNEQEVEKEPGCKRALSVQASLMTPVQPMLAEACKSIEYAMKKCPNGM
FSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKDYIPQAFPGGHSMILDSEVLL
IDNNTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYFNDVSLMDRPLCERRKLLHDNMVE
IPNRIMFSEMKRVTKASDLADMINRVIREGLEGLVLKDVKGTYEPGKRHWLKVKKDYLNE
GAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPSSQKWCTVTKCAGGHDDATLARLQK
ELDMVKISKDPSKIPSWLKINKIYYPDFIVPDPKKAAVWEITGAEFSKSEAHTADGISIR
FPRCTRIRDDKDWKSATNLPQLKELYQLSKEKADFTVVAGDEGSSSTGGSSGENEGASGP
AVSRKAPSKPSASARKAEGKQSNANGKGGNKLSTKHSPVKLEEKLARKSSPVKVGEKRKA
TDEPPCQAKVLLDIFTGVRLYLPPSTPDFSRLRRYFVAFNGDLVQEFDMASATHVLGSRD
KNSEAQLVSPEWIWACIRKRRLVAPC
NT seq 3141 nt   +upstreamnt  +downstreamnt
atggcctgtgtaagactctggcctttgacacgttggaagcctcatcccccattggtgccc
atttatatccgtgtgtgtgtgtgtctcaccttttcatgcagctgcatgactgtggctttc
aagatcctcttcccagaaagtctccgagcccttggccgaaaagaactgtgcctgttccga
gaacagcatcgctggcctgacctcaaactgtttagctggtggtcggaaacagatgtgctc
cgtgggcgctgcctcctcccgagaagaaagcctgttccgtcatttggcgaaggtcgtcta
agagcacgtgccacctgccttgttttcctgccagggtcgcatgtgggactctgcagtggc
ccctgtgagatggctgagcaacggttctgcgtggactacgccaagcgtggcacagctggc
tgcaaaaaatgcaaggaaaagattgtaaagggcgtttgccgaattggcaaagtggtgccc
aatcccttttcagagtccggaggtgatatgaaagagtggtaccacattaaatgcatgttt
gagaagctggagcgggcccgggccaccacgaaaaaaatcgaggacctcacagagctggaa
ggctgggaagagctggaagataatgagaaggagcagataacccagcacattacagatctg
tcttccaaggcagcaagcacaccaaagaagaaagctgtcgtccaggcaaagttgacatcc
actggccaggtgacatccccagtgaaaggagcctcgttagtcaccaaccccaatccacgg
aaattttctggcttttcagctaagcccaacaactctgggcagaacccaccctcaagccct
gcccctacaacaagtttgtcctcaagcaaatgtgaccccaaacacaaggattgtctgctg
cgggagtttcgcaagttgtgtgccatggtggccgataacccgagctacaacacaaagacc
cagatcatccagaacttcctgcggaaaggctcaacaggagatggtttccgcggtgatacg
tacctaacagtgaagctcctgttgccgggggtcattaagagtgtttacaacttgaatgac
aagcagattgtgaagctcttcagccgcatttttaactgcaacccagacgatatggcgcgg
gacctagagcagggtgacgtgtcagagacaatcagagtcttctttgagcagagcaagtct
ttccccccagctgccaagagcctccttaccatccaggaagtggatgaattcctcctgcgg
ctctccaagctcaccaaagaagatgaacagcagcaggccctacaggacatcgcctccagg
tgcacagccaatgaccttaagtgcatcatcaggctgatcaaacatgatctgaagatgaac
tcgggtgcaaagcatgtgttagatgccctcgaccccaatgcctatgaagccttcaaagcc
tcgcgcaacctgcaggacgtggtggagcgggtcctgcgcaatgagcaggaggtggagaag
gagccaggctgcaaacgggctctgagcgtccaggcctctctgatgacgcctgtgcagccc
atgctggctgaggcctgcaagtccatcgagtacgcaatgaagaagtgtcccaacggcatg
ttctccgagatcaagtacgatggcgagcgagtccaggtgcataagaatggcgaccacttc
agctacttcagccgcagtctcaaacccgtcctgcctcacaaggtggctcactttaaggac
tacatccctcaggctttccctgggggccacagcatgatcttggactctgaggtgctcctg
attgacaacaacacaggaaaaccactgccttttgggactctgggagtgcacaagaaagcc
gccttccaagacgctaatgtgtgcctgtttgtttttgactgtatctacttcaatgatgtc
agtttgatggatcgacctctgtgtgagcggcggaagcttcttcatgacaacatggttgaa
attcccaacaggatcatgttctcagaaatgaagcgagtcacaaaagcttcggacttggcc
gacatgataaaccgggtgatccgggagggcttggaagggctggtgctgaaggatgtgaag
ggtacatacgagcctgggaagcggcactggctgaaagtgaagaaagactatttgaacgag
ggtgccatggccgacacggctgacctggtcgtccttggggccttctatgggcaagggagc
aaaggtggcatgatgtcgatcttcctcatgggttgttatgaccccagcagccagaagtgg
tgcacggtcaccaagtgtgcgggaggccatgacgacgcgacacttgcccgcctgcagaag
gaactggacatggtaaaaataagcaaggatcccagcaaaatacccagctggctgaaaatc
aacaagatctactatcctgacttcattgttccagacccaaagaaagctgctgtgtgggag
atcacaggggctgaattctccaagtctgaagctcacacggctgacgggatctccatccga
ttccctcgctgcacacgaatccgggacgataaggactggaaatctgccactaacctccca
caactcaaggaactgtatcagctgtccaaggagaaagcagacttcaccgtagtggctgga
gatgaggggagctcctctacagggggcagcagtggtgagaatgagggtgcctccggacct
gctgtgtcccgcaaagcccccagcaagccctctgcgagtgccaggaaggctgaagggaag
cagagtaatgccaacggcaaaggcggcaacaagctgagcacaaagcattcccctgtgaaa
ctggaggagaagctagccaggaagtcttccccggtgaaagtaggggagaagcggaaagct
actgatgagcccccgtgccaagcaaaggtgctgctggacatcttcactggggtgcggctc
tacttgccaccctccacaccagacttcagccgcctcagacgctattttgtggcattcaac
ggagacctggtacaggaatttgacatggcctcagccacacacgtgctgggtagcagggac
aagaattctgaggcccagctggtctccccagagtggatttgggcatgcatccggaaacgg
aggctggtagctccctgctag

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