Oryctolagus cuniculus (rabbit): 100345325
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Entry
100345325 CDS
T03373
Name
(RefSeq) pre-mRNA-processing factor 40 homolog B isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
ocu
Oryctolagus cuniculus (rabbit)
Pathway
ocu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100345325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ocu03041
]
100345325
Spliceosome [BR:
ocu03041
]
Complex A
U1 snRNP components
U1 related factors
100345325
Complex B
100345325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
SelB-wing_2
RhoGAP-FF1
DTW
Motif
Other DBs
NCBI-GeneID:
100345325
NCBI-ProteinID:
XP_051701412
Ensembl:
ENSOCUG00000001750
LinkDB
All DBs
Position
4:41426501..41445391
Genome browser
AA seq
1039 aa
AA seq
DB search
MQRCPSAGRRAPSCIEDGRVRSTFYHLSFFMPTLDSGSPSPSSPDHSQAACLRHSLYSAA
FRPGYRATLFWNLLVCKNLVRLGVRLLFASLHFCAGPEETRGSGLKGDKSILQPRESPHP
EWGDSSPMGDAQQAVSEEPLSSGTQSVPDSGPRPPAAPAPFPPGPPMMPPPFMPPPGMPP
PFPPMGLPPMSQRPPAIPPVPPGILPPMLPPMGAPPPLTQIPGMVPPMMPGMLLPAVPVT
AATAPGADTASSAVPGTGPLRALWSEHVAPDGRIYYYNADDKQSVWEKPSVLKSKAELLL
SQCPWKEYKSDTGKPYYYNNQSKESRWTRPKDLDELEALVKQEAAGKQKPLAPQTLQPQP
PQPQPDPPPAPPGPAPASSGLLEPEPGGSGDCDVAEAAQPLEQGFLQPPEEGPSSSAAQP
QPPQQEEEEPKPEPERSGLSWSNREKAKQAFKELLRDKAVPSNASWEQAMKMVVTDPRYS
ALPKLSEKKQAFNAYKAQREKEEKEEARLRAKEAKQTLQHFLEQHERMTSTTRYRRAEQT
FGELEVWAVVPERDRKEVYDDVLFFLAKKEKEQAKQLRRRNIQALKSILDGMSSVSFQTT
WSQAQQYLMDNPSFAEDHQLQNMDKEDALICFEEHIRALEREEEEERERARLRERRQQRK
NREAFQTFLDELHETGQLHSMSTWVELYPAVSTDVRFANMLGQPGSTPLDLFKFYVEELK
ARFHDEKKIIKDILQDRGFCVEVDTAFEDFAHAISFDKRAAALDAGNIKLTFNSLLEKAE
AREREREKEEARRVRRREAAFRSMLRQAAPALELGTAWEEVRERFVCDSAFAQITLESER
IRLFREFLQVLEQTECQHLHTRGRKHGRKGKKHHHKRSHSPSGSESEEEELPPPSLRPPK
RRRRNPSESGSEPSSSLDSVESGGAALGGRGSPSSHLLLGSADHGLRKAKKPKKKLKRRH
KSNSPESGSGPEERAGKESEEQEQDKARELRQVEFPRRAPGLSIKKEKQTGWDTSESELS
EGELERRRRALLQQLDDHQ
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgctgtccgagtgctggccggagagcgccgtcctgcattgaggatggccgtgta
cggtcaacattttatcacttgagtttcttcatgccgacattggattccggttccccctcc
ccaagcagcccagaccacagccaagctgcctgcctccgccacagcctgtactcagcagct
tttaggccggggtacagggccacactgttttggaatcttctggtttgcaaaaacctagtg
aggttaggtgtgagactgctctttgcatcgctgcacttctgtgcaggccctgaggagaca
cgtgggagtggtttaaaaggagataagtcgatcctacaacctagggaatccccccacccg
gagtggggagacagcagtcccatgggagacgcccagcaggcagtctccgaggagccctta
tcctcagggacgcagtcggttcccgattctggtccccggcccccagcagcgcctgccccc
ttcccaccggggccccccatgatgccaccacccttcatgccccctccagggatgccccca
ccctttccgccaatggggctaccccccatgagccagaggccaccagccattccccctgtg
ccaccgggcatcttgcccccaatgctcccacccatgggggcgccgccaccactcacacag
attccgggcatggtgcctccgatgatgccgggaatgctgctgccggcggtgcccgtcacc
gcagcgacggctccgggtgcggacaccgccagctctgctgtgcctgggacaggccctctg
agggcgctctggagcgagcacgtggcccccgatgggcgcatctactactacaatgccgat
gacaagcagtccgtgtgggagaagcccagcgtgctcaagtccaaggcagagctgctgctg
tctcagtgtccctggaaagagtacaagtcggacacaggcaaaccttactactacaacaac
cagagtaaggagtcccgctggacccggcccaaggacctggatgagctagaggctctagtc
aaacaagaggctgcaggaaagcagaagccgctggcgccacagacactacagccccagccg
cctcagccgcagcctgaccccccacctgcacctcccggccctgcgcccgcgtcctcaggc
ctgctggaacccgagccgggtgggagtggagactgtgatgtggcggaggccgcccagccg
ctggagcagggcttcctgcagcccccggaggagggccccagcagttctgccgcgcagccg
cagccaccacagcaggaggaggaggaacccaagcctgaaccggagaggtccggcctcagt
tggagcaaccgggagaaggcgaagcaggcgttcaaggagctgctgagggacaaggccgtc
ccctccaatgcatcatgggaacaggccatgaagatggtggtcactgacccccgctatagt
gccttgcccaaactgagtgagaagaagcaggcattcaacgcgtataaggcgcagcgggag
aaggaggagaaggaggaggcccggctgcgggccaaggaggccaagcagacgctgcagcat
ttcctggagcagcacgagcgcatgacttccaccacccgctaccggcgggcagagcagacc
tttggcgagctggaggtttgggccgtggtccctgagagggatcgaaaagaggtgtatgac
gacgtcctgttcttcctggcgaagaaggagaaggagcaggccaagcagctccggcgccgc
aacatccaggccctgaagagcatcctggacgggatgagcagcgtcagcttccagaccacc
tggtcgcaggcccagcagtacctcatggacaaccccagctttgctgaggaccatcagctg
cagaacatggacaaggaggatgcgctgatctgcttcgaggaacacatccgagctttggag
agggaggaggaggaggagcgggagcgggcccggctccgggaacggcgtcagcaacgcaag
aaccgggaggccttccagaccttcctagatgagctgcacgagacagggcagctgcactcc
atgtctacctgggtggagctgtacccagcagtcagcactgacgtccgcttcgccaacatg
ctgggccagccgggctccacccctctggacttgttcaagttctatgtggaggagttgaag
gcacggttccatgatgagaagaagatcattaaagacattcttcaggaccggggcttctgt
gtggaggtggacacggcctttgaggacttcgcccacgccataagctttgacaagagggct
gccgcgctggacgcaggcaacatcaagctgaccttcaacagtctgctggagaaagcagag
gcgcgggagagagagcgggagaaggaggaggcgcgcagggtgcggcgccgggaagcggcc
ttccgaagcatgctgaggcaggccgcacctgctctggagctgggcactgcctgggaagag
gtccgcgagcgctttgtgtgtgactcagcctttgcacagattactctggagtcggagcgg
atccggctcttccgcgagttcctgcaggtgctggagcagaccgagtgccagcacctgcac
accagaggccggaagcatggcaggaaaggcaagaagcaccatcacaagcggtcgcactca
ccctcaggctctgagtccgaggaggaggagctgcccccaccatccctccggccccccaag
cggaggcggcggaacccctcggagtccggctcggagccctcttcctcacttgattcagtt
gagagtgggggtgctgcccttggaggacggggctccccgtcctctcacctcctccttggg
tcagcagaccatggccttcggaaagccaagaaaccaaaaaagaaattgaagagaagacac
aagtcgaacagccctgagagtgggagcgggcctgaggagagagctggcaaggagagtgag
gagcaggagcaggacaaggccagggagctccggcaggtggagttccctcgccgcgccccg
ggcctcagcatcaagaaggagaagcagacaggctgggacacatcggagagcgagctgagc
gagggcgagctggaaaggcggcggcgggcgctcctgcagcagctggacgaccaccagtga
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