Orrella dioscoreae: ODI_R4157
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Entry
ODI_R4157 CDS
T05133
Name
(GenBank) ATP-dependent DNA ligase clustered with Ku protein, LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
odi
Orrella dioscoreae
Pathway
odi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
odi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
ODI_R4157
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
odi03400
]
ODI_R4157
Enzymes [BR:
odi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
ODI_R4157
DNA repair and recombination proteins [BR:
odi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
ODI_R4157
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
SOE52408
UniProt:
A0A1C3K5M0
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Position
I:complement(4558968..4561442)
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AA seq
824 aa
AA seq
DB search
MADTLKAYRAKRDFTLTAEPADGGQANPDARAFVIQKHWASRLHYDLRLELDGAMKSWAV
PKGPSYDPSVKRMAVQVEDHPIAYNQFEGDIPKGQYGAGKVIIWDEGTWAPVGDPRAGYR
KGHLKFALHGRKMQGGWALVRMKGKGEKQPPWLLIKEKDALARAEDDFSVVEAFPDSVVP
LRQAAGSGALPGVAADLPGALSPQLATLADAVPGSRSEWLYEIKFDGYRILARVEGEDVR
LYTRNGHDWTARMPRLAKTLARLDARSAWIDGEVVVLAENGAPSFQVLQNAFDSERTADI
VFYAFDLPYLGGRDLRGEPLSVRRHWLEKLMARSRDDHLRFSEAFDAAPSQLAATACKMG
LEGIIAKRQSSRYVSRRSPDWLKIKCARRQEFVVVGYTAPKGGRSGFGALLLAVHDAQGG
LRYAGRVGSGFDAAGLARMKQQLDALRATAPPLQGPTGAGGGITWVAPQLVVEVSFGEWT
SSGHVRQAVFRGVREDKPAQSITKEAPMAAKRAKAVAKKTVPARRRIRGAAPEGEAKLGK
LTHPERVIDPSTGLTKLDLARYYGQVATLILPQLKNRPVSFLRAPQGIHEEQFFQKHKEA
RIPGVRDLPRSLDPDHAPLMEVSTPQALLSAVQMNVVEFHTWNASKTVIGKPDRLLFDLD
PGKGVAWLAVKEGAALLRSLLEEIGLRAWLKTSGGKGLHVVVPLRRQYEWGTVKDFSAEI
VRHLARTIPQRFVAKSGPRNREGKIFVDYLRNGFGATTVAAWSARARPGLGVSVPIGWDE
LDSLESSAQWTIADIAARLEVGNAPWSDYAPQAIGRAMKAMGMA
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atggccgatacgctcaaggcctatcgcgccaaacgtgatttcacgttgaccgccgagccc
gccgacggcggccaggcgaaccccgatgcgcgggctttcgtcatccagaaacactgggcc
agccggctgcactatgacctgcgcctggaactggatggcgccatgaagagctgggcggtg
cccaagggccccagctacgacccgtcggtcaagcgcatggccgtgcaggtcgaggaccat
cccattgcctataaccagttcgaaggcgacatccccaagggccagtacggcgcgggcaag
gtcatcatctgggacgaaggcacgtgggcacccgtgggcgatccccgtgccggttatcgc
aaggggcacctgaagttcgcgctgcacggcaggaagatgcagggcggctgggcactggtg
cgcatgaagggcaagggcgagaagcagccgccgtggctgctcatcaaggagaaggacgcg
ctggcgcgtgccgaggacgacttcagcgtggtggaggcattcccggacagcgtggtgcca
ttgcgccaggccgcgggctcgggtgcgcttcccggcgttgcggcggacctgcccggcgcg
ctgtcgccgcaactcgccaccctcgccgacgccgtgccgggctcgcggagcgagtggctg
tacgagatcaagttcgacggctaccgcatcctggcaagggtggaaggagaggacgtccgg
ctctacacccgcaacgggcacgactggacggcgcgcatgccgcggctggccaagaccttg
gcgcggctggatgcgcggtccgcgtggatcgatggcgaagtcgtggtcctggccgagaac
ggcgcacccagcttccaggtcttgcagaatgccttcgacagcgagcgcactgccgatatc
gtcttctatgcgttcgacctgccttacctgggcgggcgcgacctgcgcggcgagccgctg
tcggtgcgcaggcattggctggaaaagctgatggcgcggtcccgcgatgaccatctgcgc
ttcagcgaggcattcgacgcggcgccatcgcagcttgccgccacggcctgcaagatgggc
ctggaggggatcatcgccaagcgccagtcgtcgcgctacgtctcgcgccgcagtcctgac
tggctgaagatcaagtgcgccaggcggcaggagttcgtcgtggtggggtacaccgccccc
aagggaggacgcagcggcttcggcgcgctgttgctggcggtgcatgatgcgcagggcggc
ttgcgctacgcgggccgggtcggctcgggcttcgacgccgccggtcttgcccgcatgaag
cagcagttggatgccttgcgtgccacggcgccgccgctccaggggccgacaggggcgggc
ggcggaatcacctgggtggcgccgcaactcgttgtcgaggtgtcgtttggcgagtggacg
tcctccgggcacgtgcgccaggcggtattccgcggcgtgcgcgaagacaagcccgcgcag
tcgatcacgaaggaggcgcccatggcagccaagcgtgcgaaagcggtcgcgaagaagacc
gtgcctgccaggcgccgcatccgcggcgcggcgccggaaggcgaggcgaagttgggcaag
ctgacccatcccgagcgcgtcatcgatccgtccaccgggctgacgaagctcgacctggct
cgctactatgggcaggtcgcaacgctgatcctgccgcaactgaagaaccgccccgtgtct
ttcctgcgggcgccgcagggcatccacgaggaacagttcttccagaagcacaaggaagcc
cggatccccggtgtgcgggacctgccgcgcagcctggatccggaccacgcgccgctgatg
gaagtgtccacgccccaggccttgttgtctgccgtgcagatgaacgtcgtcgagttccac
acctggaacgccagcaagacggtcatcggcaagccggaccgcctgctgttcgacctggac
ccgggcaagggcgtggcgtggcttgcggtgaaggaaggcgcggccctgctgcgatccctg
ctcgaggagatcggcctgcgggcctggctgaagacgagcggcggcaagggactgcatgtg
gtcgtgccgctgcggcggcaatacgagtggggcacggtcaaggatttctcggcggagatc
gtgcgccacctggcccggaccattccccaacgcttcgtcgccaagagcggcccccgcaac
cgagagggaaagatcttcgtcgactacctgcgcaacggcttcggcgccaccactgtcgcc
gcatggtccgcgcgggcgcggccggggctgggggtgtcggtccccatcggctgggatgag
ctcgacagcctggaaagcagcgcgcagtggacgatcgctgacatcgcggcgcgtctcgag
gtgggtaatgcgccctggtcggactacgcgccgcaggcgatcggccgggcgatgaaggcg
atgggcatggcatga
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