Ostrea edulis (European flat oyster): 125652522
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Entry
125652522 CDS
T09123
Name
(RefSeq) recQ-like DNA helicase BLM isoform X1
KO
K10901
bloom syndrome protein [EC:
5.6.2.4
]
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed03440
Homologous recombination
oed03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
125652522
03460 Fanconi anemia pathway
125652522
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
oed03032
]
125652522
03400 DNA repair and recombination proteins [BR:
oed03400
]
125652522
Enzymes [BR:
oed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
125652522
DNA replication proteins [BR:
oed03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
125652522
DNA repair and recombination proteins [BR:
oed03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecQ family DNA helicases
125652522
Bloom's syndrome complex (BTR)
125652522
FA (Fanconi anemia) pathway
125652522
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
Helicase_C
RecQ_Zn_bind
HRDC
SecA_DEAD
Motif
Other DBs
NCBI-GeneID:
125652522
NCBI-ProteinID:
XP_048737765
LinkDB
All DBs
Position
5:complement(89848951..89893666)
Genome browser
AA seq
1448 aa
AA seq
DB search
MTSEISCNTVSKMNAKGPRTFKFKKTLSLNKPSRCLSEFKTFQTGVDEFSDENDDGWMTT
RPYSCNEDRQKTLNPGRSTAPTKPQLESTVLTTKINTIETKAFSNGGNKKPQQTSIMAFA
QKKKPVAAVAPHRSPEKTGEEGGTKRKRLPGNTVISILDDDDDDEFLEDFEIPTTQVALN
RSLNSTNSKKDLQRKSLNLNSTTEAERQVMDASGMTDLFGNSDSDDESPMVTKRRRTLED
QSPNWNSTGMAKCATFSNESSFCQPEVRLKPSESIIRPKSQTASKPKSQESTHGRPVSHQ
VLQAQNEQDNLNKSSQQSADVKEHGDSVETDLFKTMEEVCDIVCKASTADLMAMFPQNYQ
RLQHLLALRKQLKDSYTSKEVGRPTHKRLSAPEGTMTNSAVLNSVKATTSNLPVSDKYQT
VVNVDSSFTQSNLKSSSSCNSSPVTQRSVLLSNTSTPAMDRTLSSPSSGKTKTFSFKKTT
PIGFHSPIPCGESFFEEDAKLTQTHHSFISSFNKKSPNASFKDPPVMNFNQSATSSFLNQ
SDTKCANQSASTLRCNHSASAGYSYSTVEEPSTADFSFDYKLNNDSDVQTLPSKKGKFSA
SVLNSEDEPDVIDQFPEELFASDDFDSEFTENIQTDALPRMSISPRRQSTNQSFVSPPST
KRREEEENREFDGYNFQHSTVMRETFHQVFGLREFRTNQLKAINAALLGHDCFILMPTGG
GKSLCYQLPALVTGGVSIIISPLKALIQDQVTRLCSMDIGAGQLSSDMDQNQSDQIYRKM
YYKSPEITLLYVTPEKISASGKLLGTLDNLHKRGKLTRFVIDEAHCVSQWGHDFRPDYKK
LGILKQKYPGIPMMALTATANMRVRKDVIHQLGMKNPKCFVQSFNRPNLKFRVEPKKPST
LTADVTKVIKEQFPGKCGIVYCLSRKECDTVAADLSKTGIQAVAYHAGLGDSDRISIQEK
WLNGQRCKVICATIAFGMGIDKPDVRFVIHYSLPKSMEGYYQEAGRAGRDGQLAHCILYY
TYQDVKRLRRIIEMDQAATYDSKRVHIDNLFRMVQYCENVADCRRCQLLNYFGERDFNRE
ECGNFRGAICDNCVSKESFQLRDVTDDVKGIIKGVKDLTNSGRRGNNYTLIYFVEIFRGA
KTGKICDAGHDRVPLYGQGKNYSRADAERLLRKLVIDGILIEDLQITAAETTACYIRLGP
KANDVMMGRCKVELQVQGSRKRTEVAKIGKEPISKRQNITEQCLNELLEMAKEIAAEHGL
RNYATVFPILTLRQLAEKTPQTVEEMTQTIDGLPKAKVNKYGAERFLEVTKTYHLILSNL
QQEEEEAESDVPEWESPYFVDESTISSNRGRKKGFKKRGFGRKKRGGGGGRSGAGKATGN
APDKGNKFAAYKFNRGSSKKAPSAGNSKRGGSGSSRGGFSGGGGGLGFMPVPQPKRSFLS
SGSGTFFG
NT seq
4347 nt
NT seq
+upstream
nt +downstream
nt
atgacttcagaaatatcttgtaatacagtttccaaaatgaatgcaaaaggtcccaggaca
ttcaaatttaagaagactctaagcttgaacaaaccaagtagatgtctgagtgaattcaaa
acctttcaaactggtgttgatgagtttagtgatgaaaacgatgatggatggatgacaaca
cgaccctattcctgtaatgaggacagacagaaaacactcaatcctggtcgtagcactgca
cccacaaagccacagctggaaagcacagtccttactacaaagataaatacaattgaaaca
aaagccttttcaaatggaggaaataaaaagccccagcagacttccatcatggcatttgca
cagaagaagaaaccagttgcagcggtggctccacacaggtcgcctgagaaaactggagag
gagggtgggacgaagagaaagcggttgccagggaacaccgtcattagtattctggatgat
gatgatgatgatgaatttcttgaagattttgaaatacctacaactcaagtggcactaaac
agaagtttgaattcaaccaatagcaagaaggacttacaaaggaagtctttaaacctaaac
agcaccactgaagcagagagacaggtcatggatgcctcagggatgacagatttgtttgga
aacagcgattcagatgacgagagtcctatggtgactaagcgacgtcgaactcttgaagat
caatctcccaactggaactcaactgggatggcaaaatgtgctacattttcaaatgaaagt
tccttttgtcaacctgaagtgagacttaaaccttctgagagcatcattagaccaaaatca
cagactgcatccaagcctaagtcccaggaaagcactcatggaagaccagtgtctcaccaa
gtcctacaggcacagaatgaacaggataaccttaacaaatctagtcaacagtcggcagat
gtgaaggaacatggtgacagcgttgagactgacctatttaagacaatggaggaggtgtgt
gacattgtgtgtaaggccagtacagcggacctgatggctatgtttcctcagaactatcag
cgactccagcatttactagctctcagaaaacaactaaaggattcctacacatcaaaagag
gtgggtaggcccacacataaaagactgtcagccccagaaggaacaatgacaaacagtgca
gttctgaacagtgtcaaggcaactactagtaacctccctgtgtctgataaatatcagact
gtggtcaatgtggattcttcattcacccagagcaatttgaaatctagtagttcatgtaat
tctagtccagtgacccagcgatctgtgttactgtctaatacctcaactcctgcaatggat
aggactctaagttcaccaagttctggtaaaaccaagacattctccttcaagaaaacaact
cccattggtttccattccccaataccctgcggtgaaagtttcttcgaggaagatgccaaa
ttaactcaaacacatcacagtttcattagctcattcaacaagaaatcccctaatgcatca
ttcaaagacccacctgttatgaatttcaaccaatcagccacatcctcctttctaaaccaa
tcagatacaaaatgtgcgaaccaatcagcatctaccttgcgttgtaaccattcagcatct
gcaggatactcctatagcactgttgaagaaccatctactgcagactttagctttgactac
aaactgaataatgatagtgatgtgcaaactctgccatcaaaaaagggcaaattttcagcc
agtgttcttaattctgaggatgagcctgatgtgattgatcagtttcctgaggagctattt
gcttctgatgactttgactcggaatttacagagaatatccagacagacgctctgccacgg
atgtctatctctcccagaagacaaagcaccaaccaaagctttgtttccccacccagtacc
aaaaggagggaggaggaggagaaccgggaattcgatggctacaatttccagcacagtaca
gtaatgagagagacgtttcatcaggtgtttgggttacgtgaattccgaaccaaccaactg
aaggccatcaatgcagccctcctaggacatgattgcttcattcttatgcctacaggaggt
ggtaagagtctatgttaccaactgccagccctagttactgggggtgtgtctattattatc
tcacccctgaaggctcttattcaggatcaggttaccaggctctgctccatggatatagga
gcagggcaactttcctctgacatggaccagaaccagtcggatcagatatacaggaagatg
tactacaaatctccggagatcacacttctctatgtcactccagaaaagatttcagccagt
gggaaattgttgggaactttggacaatttacacaaaaggggaaagctgacgagatttgta
attgacgaagcacattgtgtcagccagtggggtcatgacttcagaccagactataagaag
ctgggaattctgaagcagaaatatccaggaattcctatgatggctctgactgccacagcc
aacatgagagttcgtaaagatgtcatccaccagctgggcatgaagaatccaaaatgtttt
gttcaaagctttaatcgtccaaatttaaagttccgagtcgagccaaagaagccatccact
ctcacagcagatgtgactaaagtgatcaaggaacagttcccagggaaatgtggcattgtc
tactgtctgtcaagaaaggaatgtgacacagttgctgctgatttgagtaagactggcatt
caggccgtggcttaccacgcaggccttggcgacagcgatagaatttctatccaggaaaaa
tggttaaatgggcagagatgcaaggtgatatgtgctaccattgcttttggtatggggatt
gacaaacctgatgtcagatttgttattcactactccttaccaaagtctatggagggatat
tatcaggaggcggggcgagcgggcagagatggacaactggcccactgcattctgtactac
acctatcaggatgtcaaaagactacgcaggatcatcgagatggaccaggcagctacatat
gattccaagagagttcatattgacaacctcttcagaatggtccagtactgtgagaatgtg
gctgactgtcgtcgctgtcagctgttgaattacttcggagaacgagattttaacagagag
gagtgtggaaatttccgtggagcaatttgtgacaactgtgtatcaaaggaatccttccag
ctccgtgatgtcacggatgatgtaaagggcatcattaaaggtgtgaaagatctgaccaac
agtggaagaaggggaaacaactataccctgatctactttgtggagatatttagaggagct
aaaacgggtaaaatttgtgatgctggacatgacagggtacccctttatggtcaagggaaa
aattacagtagggctgatgcagaaagactgctgaggaagctggtcattgatggaatttta
atcgaggatctgcagataacagcagcagaaaccacggcatgttatataagactaggacct
aaagctaatgatgtcatgatggggagatgcaaggttgaattacaagtgcagggtagccgg
aagagaactgaggtggcaaagattggtaaagagcccatcagcaaacgtcagaacatcacc
gagcagtgtctcaacgaactcctggaaatggccaaagaaattgctgcagaacatgggtta
cgtaattatgcaactgtgttcccaattctaactctgaggcaattagctgaaaagactcca
caaactgttgaggagatgacacagaccattgatggtttgccaaaagctaaagttaacaaa
tatggtgcagagaggttcctagaagttaccaaaacttatcacctgatactctcaaacttg
caacaagaagaggaagaagctgaatcagatgtaccagagtgggaatcaccatattttgtg
gatgagtcgacaatatcatcaaacagaggcagaaaaaagggcttcaaaaagagaggtttt
ggaagaaagaagaggggagggggtggtggcagatctggtgcaggaaaagctactggaaat
gcccctgataaaggaaacaaatttgcagcttacaaattcaacagaggatcatccaaaaaa
gcaccaagtgctggtaattccaagaggggtggatctggcagttctcggggtggattcagt
ggtggtggaggtggcctaggatttatgccagtcccacaacctaaaagatcatttctgagc
agtggaagtggtacattctttggatga
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