Oryza glaberrima (African rice): 127760073
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Entry
127760073 CDS
T08853
Name
(RefSeq) nuclear pore complex protein NUP62
KO
K14306
nuclear pore complex protein Nup62
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
127760073
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogl03019
]
127760073
Messenger RNA biogenesis [BR:
ogl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
127760073
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nsp1_C
Nucleoporin_FG
Flagellar_rod
SGT1
COG3_N
APG6_N
Motif
Other DBs
NCBI-GeneID:
127760073
NCBI-ProteinID:
XP_052140242
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All DBs
Position
1:complement(33856748..33864138)
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AA seq
744 aa
AA seq
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MATSFSFGSSAASGSTGSSPFSFSTGTAQSAFSFSQPAAAASSPAPASAPAFGSSLFSSS
SSAAAPTFGSSLFGSAPAASAAAPATSSSPSPFGFGSTGFSFGQSTAAAASAPSIFGASS
TPATATTPSVFGAASSAASTPNIFGGATSSPATTPSLFGGASSAATAPSPFGATSAAAAA
PGLFGAAASAASAPSLFSGAATGFGFGSAASGTTTAATAAASTPSFGFGLNTGAAASSTT
TTSASSPALGFGAGTGSALFGSTTSAPLFSTTTASSPATTASFGFSSSPATAASAPSFGF
TPSSATTTTASTAPALFSSASSAPAFSFTKSSSAAPTTPASAPSTGFSLATSPAAPAPSL
FSNTSAAASSSATSLSFPFGSSSASAPAFASASATSASTPSAATASPATSGSLFSVPAPA
SSAGGFSFTVVPSSSSAAATTATTTTVTSASTSAAMTTPAPSATTTATLFSQQRTTPASA
SAPSTQTQSILSFGVSTVAASTSTTITSTSQATSSAVQASSTGPTTTAITPVASQAPKLP
SEIVGKNVEQIIRDWNNELQDRTAKFRKHATAISEWDRRILQNRNVLIRLEAEVAKVVET
QTSLERQLELIETHQKEVDKALQSMEEEAERVFQDERLLLREDEAASARDTMFEQSETVE
NELQHMTEQVKSIIQTLNATQGAEFETADSMTPFDVAVRILDNQLRSLMWIDEKANEFSS
RIQRLPNNSAAAERDSGMPRFWLS
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atggcgacctccttctctttcggctcttccgccgcgtcgggatccaccggctcctcccca
ttctccttctccaccggcaccgcccaatccgccttctccttctctcagcccgccgccgcc
gcctcctcccctgcccccgcctccgccccagccttcggctcctccctcttctcctcctcc
tcctccgccgccgctcccacttttggctcctccctattcgggtccgcccccgccgcctcc
gccgccgcccctgccacctcctcatccccatctccgtttggcttcggatccaccggcttc
tcgttcggccaatccaccgccgccgccgcgtccgccccatccatcttcggcgcgtcctcc
acccccgccaccgcgaccacccctagcgtattcggcgccgcatcatccgcggcatccacc
cccaacatcttcggcggcgccacctcctccccggcgaccaccccgagcttattcggcggt
gcttcctccgcggctaccgcacccagtcctttcggcgccacctccgccgccgccgccgca
cccggtctgttcggggccgccgcgtccgctgcttccgcgccaagccttttctctggcgcc
gccacgggctttggctttggctcagctgcgtcgggcaccaccactgccgcgaccgctgct
gcctcgacaccgtctttcggcttcgggttgaacaccggggccgctgcatcgagtaccacc
actacttcggcttcctctccggctctagggtttggagcaggcaccggctcggcgctgttt
ggatccactacctctgcaccactcttcagcaccaccaccgcctcgtccccagcgaccacg
gcgtcctttggcttctcatcgtcgccagcgaccgccgcctctgctccgtcgttcggcttc
acaccgtcatcggcaaccaccacgaccgcgagcaccgcccctgccttgttctcttctgca
tcttccgctcccgccttctccttcacgaagagtagctctgctgctcccaccacgccagcg
tctgctccatctactggcttctccttggccacttcgccggcagcacctgctccctcattg
ttctctaacaccagtgcagcagcaagctcgtctgccacttctctcagctttccgtttggc
tcatcttctgcttctgcaccggcatttgcttctgcttctgcaacgagcgcatccacaccg
tcagcagctactgcttcccccgcgacatcagggtcattgttctcggtgccagcacctgct
tcttctgctggtggtttcagtttcacagtagtaccatcgtcatcatcagctgcggctact
acagctactaccacaacagtcacaagtgcatcgacatctgcagccatgacaacgccggct
ccttcagcaacaacaactgctacactatttagccagcagagaactacaccagcttctgcc
tcagctccatcaacacagacacagtcaatattgtcattcggtgtttctactgtagctgca
agtacttcaaccaccatcacaagcactagtcaggcaacttcctcagctgttcaagctagc
agcactggtcctacgactactgctatcactccagtagcatcacaggcacctaagctacca
tcagaaattgttgggaaaaatgttgagcagattattagggactggaataatgaacttcaa
gatcgcactgcgaagttccggaagcatgccactgcaatatctgaatgggacaggagaatt
ctgcagaacaggaatgttcttataaggcttgaggctgaggtggctaaagttgttgaaaca
caaacaagcttggagaggcaacttgagttaatagaaactcaccagaaagaggttgacaag
gctctgcagagcatggaggaggaagcagagcgggtattccaggatgaacggctgttgctt
cgtgaagatgaggctgcttctgcaagagatacaatgtttgagcaatctgaaactgtggag
aatgaattgcaacatatgacagaacaagtgaagtccatcattcagacattgaatgctact
cagggtgctgagtttgagactgctgatagtatgacaccatttgatgttgctgtccggata
ctggataatcaactgcgttctttaatgtggatcgatgagaaggctaatgagttctcaagt
agaatacagaggctacctaacaacagtgctgcagctgaacgtgactctggaatgccaagg
ttttggttaagctga
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