Oryza glaberrima (African rice): 127766206
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Entry
127766206 CDS
T08853
Name
(RefSeq) vacuolar protein sorting-associated protein 35B
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
127766206
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ogl04131
]
127766206
Membrane trafficking [BR:
ogl04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
127766206
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
Motif
Other DBs
NCBI-GeneID:
127766206
NCBI-ProteinID:
XP_052147248
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All DBs
Position
3:32758689..32766856
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AA seq
793 aa
AA seq
DB search
MLPDGGADDEERWLAEGIAGVQQNAFYMHRALDSNNLKDALKYSAQMLSELRTSRLSPHK
YYDLYMRAFDEMRKLEMFFREETRRGSCSVVDLYELVQHAGNVLPRLYLLCTVGSVYIKS
KEAPAKDVLKDLVEMCRGIQHPLRGLFLRSYLSQISRDKLPDIGSEYEGDADSINDAVEF
VLQNFIEMNKLWVRMQHQGPVREKEKRGKERNELRDLVGKNLHVLSQIEGVDLDMYKETV
LPRILEQVVNCKDELAQFYLMDCIIQVFPDEYHLQTLETLLSAFPQLQPNVDIKTVLSQL
MDRLSSYAAASPEVLPEFLQVEAFAKFSNAIGKVIEAQVDMPVVGAVTLYVSLLTFTLRV
HPDRLDYVDQVLGACVKKLSGNAKLEDSRATKQIVALLSAPLEKYSNIVTALELSNYPRV
MDYLDNSTTKVMALVIIQSIMKNTTCISTSDKIEALFDLIKGLIKDMDGAQNDELDDEDF
KEEQNSVARLIHMLHNDDHEEMLKILCTVQKHILQGGPKRLPFTVPSLVFSALKLVRRLQ
GQDGDVIGEEVPATPKKIFQILHQTIEALSCVPSPELALRLYLQCAEAANDCDLEPVAYE
FFTQAFILYEEEIADSKAQITAIHLIIGTLQRMNIFGVENRDTLTHKTTGYSAKLLKKPD
QCRAVYACSHLFWTDDQDGIMDGERVLLCLKRALRIANAAQQMANVTRGSSGSVALFIEI
LNKYLYFFEKGIPEITNTVIQDLIELIRTEKQSENTVADPSTEAFFASTLRYIEFQKQKG
GSIGEKYEQIKTT
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
atgctgccggatggcggcgccgacgacgaggagcggtggctcgccgagggcatcgccggc
gtccagcagaacgccttctacatgcaccgcgccctcgattcgaacaacctcaaggatgcg
ctcaagtactcggcgcagatgctctccgagctgcggacctcgcggctctcgccgcacaag
tattatgatctatatatgagggcgtttgatgagatgcggaagctggagatgttcttcagg
gaggagacccgtcgtggcagctgctccgttgttgatttgtatgagcttgtgcagcatgct
ggcaacgtactgcccagactctatctcctctgcacagtaggatctgtgtacattaaatca
aaagaggctcctgcgaaagacgttcttaaagaccttgttgaaatgtgtcgaggcatccaa
catcctcttcgtgggcttttcctaagaagctacctatctcagataagccgagacaaactg
ccagatattggttccgagtatgaaggggatgctgacagcattaacgacgcagttgagttt
gttcttcagaatttcatagaaatgaacaaactctgggtccgaatgcaacatcagggccct
gttcgagagaaggagaagcggggaaaagaaagaaatgaactgcgtgatttggtaggcaaa
aaccttcacgttctaagccagattgagggtgttgaccttgacatgtacaaagaaactgtc
cttccaaggatattagaacaggtggttaattgtaaggatgaacttgcacaattctacctg
atggactgcataatacaagtctttccagacgaataccatttacagacattggaaacattg
ttgagcgcatttccgcaactacagccaaatgttgatatcaaaaccgtgctgtctcaactc
atggacaggttatcaagctatgctgccgcaagtcctgaagtattgccagaattcttgcaa
gttgaagcttttgcaaagttcagcaatgctattggaaaggtgatagaggcccaagttgac
atgccagttgttggtgcagtaactttatatgtatcacttttgacatttactctccgtgtg
catccggatcggcttgattatgttgatcaagtgttgggtgcatgcgtaaagaaactttca
gggaatgcaaaacttgaagatagcagggcaacaaagcaaattgttgcacttctcagtgcc
cccctggagaaatatagcaatattgttactgcattagagctctcaaactatcctcgggtt
atggattaccttgataattctacaacaaaagttatggctcttgtaataattcaaagcata
atgaagaacacgacttgcatatctacttctgacaagattgaagctctttttgatttaatt
aaaggtcttataaaagatatggatggggctcaaaatgacgagcttgatgatgaggatttt
aaggaggaacagaattctgtggcgcgtcttattcacatgttgcacaatgatgaccatgaa
gagatgttgaagatattatgcaccgttcagaagcatatacttcagggaggtcccaagcgg
ctacctttcactgtgccatccttagtattctctgctctcaagttggtccgaagattacaa
ggtcaagatggtgatgtaataggggaggaagttcctgcaacgcctaagaaaatatttcag
atcttgcatcagaccattgaagctctctcatgtgttccttctcctgaactggctctcaga
ttatatctgcagtgtgcagaggcggccaatgattgtgatctggaaccggttgcttatgag
ttctttactcaagcattcatcttatatgaagaagaaattgcggattcaaaggctcaaatc
actgcaattcatcttataattggaacccttcaacggatgaatatattcggggttgaaaat
agagataccctgactcacaagacaacagggtactcagcaaaacttctaaagaagcctgac
caatgccgagcggtttatgcatgttcacaccttttctggactgacgaccaagacggaata
atggatggtgaaagggtcctcctttgtttaaagcgtgccttaagaattgcaaatgccgct
caacagatggctaatgtaacaaggggaagtagcggatctgtcgcgctatttatcgaaatt
ttgaacaagtatttgtacttcttcgagaaaggaattccagagatcacgaacactgtaatc
caggatttgattgaattgattaggacagagaagcaaagtgagaacactgtagctgatcca
tcgacagaggccttctttgcaagcactttacgttacattgaattccagaagcagaaaggt
gggagcataggtgaaaaatatgagcaaataaaaactacctga
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