Oryza glaberrima (African rice): 127777280
Help
Entry
127777280 CDS
T08853
Name
(RefSeq) DNA ligase 6 isoform X1
Organism
ogl
Oryza glaberrima (African rice)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DRMBL
DNA_ligase_A_C
UBA_4
RMMBL
Lactamase_B_2
Choline_bind_3
Motif
Other DBs
NCBI-GeneID:
127777280
NCBI-ProteinID:
XP_052159817
LinkDB
All DBs
Position
1:complement(25709303..25721663)
Genome browser
AA seq
1404 aa
AA seq
DB search
MAYLFSSPDSKSLSVATSTLFLSSLASLPSPHSEPPSASAASPLSPVPASVPPTALIPGS
RFLVDAFRHAGDFTASYFLSHFHSDHYTGLGPSWRRGLVFCSPLTARLLVSVLSVPPQLV
VVLDAGVRVTVDGWCVVAVDANHCPGAVQFLFRSSGPNAERYVHTGDFRFSQSMITEPNL
LEFIGADAVFLDTTYCNPKFTFPPQKESLEYVVNSIKRVKEESRASGERVLCLIATYVVG
KERILLEVARRCGCKIHVDSRKMEILTLLGIGGEDGVFTEDAAATDVHVTGWNILGETWP
YFRPNFVKMKEIMVERGYNKAVGFVPTGWMYETKKEGFAVRTKDSLEIHLVPYSEHSSYD
ELRDYVKFLHPKRVIPTVGLDGGKPDSKEAFALQKHFAGLVDETANKQEFLMAFHRSSRN
ATLGPEDAVTGLSQQEGEVQELEEATLLPASLAFERSDSFQEKITVEMKKELSDFLPSWV
SQDLILDLLIKSGGDVVQAATDFFEKERDFFEEANVYNSETPKSEIDLSSDHGSSADASS
QQEVPLFSQKPMDHSSKLLNLNAMRMKSNLSKRERKRGSNSADKPKKKGRSTAFKPLTES
SGRKQSTITNYFARTMLAASKSDTSDKVTVDTNQNNVRNDDQFTEVVESEKQSVSQLLQI
VDGGMSRESAISLLEKAKGDVNVAVDIFYSKTDNSNVLENDMNIVTQNTENEMTDKSSST
GLLRNSSEDTPKMPNLCVQSYVAQADSVCISLPIEKYLPIEHACWTAGQPAPYLHLARTF
DLVEREKGKIKTTAMLCNMFRSLLALSPDDVLPAVYLCTNKISPDHENIELNIGGSLVVS
ALEEALGSSRSKIHEMYKTFGDLGDVAQECRQNQMLLAPPRPLSIRDVFSTLRKLSGIAG
SGSTGRRKILVLHLIRSCREMEMKFLVRTLVRNLRIGVMMKTILPALAHAVVIDGKYSNS
PVLSLEGIKPQLQELSTEVAEAYNVIPNLDLLIPSLLREGTAFSASSLAMITGTPIPPML
ARITNGLTQSLKLFNGRAFTCEYKYDGQRAQIHRSNDGSVQIFSRQMKESTSRFPDLVGM
IKELCSIEVSSFILDAEVVGIDRKKGNKLMSFQELSSRERGSKHSSIAIQNIKVDICVFV
FDIMFCNGQSLLNCSLRQRRKYIHDLFQEKPGHFELAQQLTVEADEASVDNSTTLERMNT
FFKMACQSSCEGIMLKILDVDAGYSASKRCDSWLKVKRDYVGLGDSLDLVPIGAWYGNGR
KAGWYSPFLMACYNPEYEEFQSVCRVMSGFSDEFYKEMKEFYSGDRILPKKPVYYKTDEL
PELWFSAEQVWEIRGADLTLSPVHHAAIGLVHPSRGISVRMPRYIRSRPDRSPEDCSTAT
DVASLFKAQTRKMEVSSDGQDTSH
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atggcgtacctcttctcctccccggactccaaatcgctctccgtcgccacctccaccctg
ttcctatcgtcgctcgcctccctcccttccccccacagcgagcccccctccgcctccgcc
gcatcgccgctctctcccgtccccgcctccgtgccgcccacggcgctcatcccgggctcc
cgcttcctcgtcgacgccttccgccacgccggcgatttcaccgcctcctacttcctctcc
cacttccactccgaccactacaccggcctcggcccctcgtggcgccgcggcctcgtcttc
tgctccccgctcaccgcgcgcctcctcgtctcggtgctctccgtgccgccgcagctcgtc
gtcgtgctcgatgctggcgtccgcgtcaccgtggatgggtggtgcgtcgtcgctgtggat
gctaaccattgccccggtgccgttcaattcctcttccgctcatctggaccaaatgcggag
aggtatgtccacacgggcgacttccggttttcgcagtctatgataaccgaacctaatttg
ctggagttcatcggtgctgatgctgtgtttctagataccacgtactgcaatcccaaattt
acgtttcctccacaaaaggagtcactggagtatgtcgtgaactcaatcaagcgggtgaag
gaggagagcagagcatctggagagcgcgtgctgtgtttgatcgcgacctacgtggtgggc
aaggagaggattttgctggaagttgcacgacgctgtggctgtaagatccatgtggacagt
aggaagatggaaatcctgactctattggggattggtggggaggatggagtttttactgag
gatgctgcagcaacagatgtgcatgtcactgggtggaatattttaggtgaaacatggccc
tattttcggccaaattttgtgaagatgaaggagatcatggtggagagaggatataacaag
gctgttggatttgtaccgaccggttggatgtacgagaccaagaaggaaggctttgcagtt
agaacaaaggattcacttgagatccatcttgtgccttatagcgagcactcgagctatgat
gagttgcgggactacgtgaagttcttgcacccaaaacgggtaattccaaccgtggggctt
gatggtggaaagcccgatagtaaagaggcatttgctctgcagaagcattttgctggtttg
gtggatgagacagcaaacaaacaggagttcctgatggcattccaccgaagctcaagaaat
gctactcttggccctgaggatgcagttactggattgagccagcaagaaggggaggtgcaa
gaactggaggaggctactttgttacctgcaagtttggcttttgaacgatcagatagtttt
caagagaagattacagtggaaatgaagaaagaattatcagatttcctaccctcatgggtc
agccaggacctgatcctggacttgctaattaagtcaggcggtgatgttgttcaagcagca
actgatttttttgagaaagaaagagatttctttgaggaagcaaatgtttataatagtgaa
acgcctaagtcagagatagatctctcttctgatcatggatcttctgctgatgcaagtagt
cagcaagaagttcctttattttcacagaagcccatggatcattctagtaagttgctgaat
ttgaacgctatgagaatgaagtcaaatctttctaaaagggaaaggaagaggggctctaat
tctgcggacaaaccaaaaaagaaagggcggtcaactgcctttaaacccttgacagaatcc
agtgggcgcaaacagtccacaattacgaactattttgctagaaccatgctagctgcttct
aaaagcgatacatccgataaagtaactgtagacacaaatcaaaacaatgtgaggaatgat
gaccagtttactgaagttgtagagtcagagaagcagagtgtaagccagcttcttcagatt
gtcgatggtggaatgtccagagagtctgcaatttcattgcttgagaaggcaaaaggggat
gtgaatgtagcagttgatatattttacagtaaaaccgacaacagtaatgtacttgaaaat
gatatgaatattgtcacacaaaacacagaaaatgaaatgacagacaaatctagtagtacg
ggcttgcttcgcaactcttctgaggacactccaaagatgccgaacttatgtgtacaatct
tatgtggcacaagcagattcagtctgtatatcattgccaattgaaaagtatctaccgatc
gagcatgcttgctggacagcaggacagcctgcaccatacttacatttggctcgcactttt
gatctggttgaaagagaaaagggaaagatcaaaactactgccatgctttgcaacatgttc
cgaagtttgcttgccttatcacctgatgatgtgctacctgctgtttatttatgtactaat
aaaatttctcctgaccatgaaaatattgaactaaacattggtgggagtttggttgtatct
gctctggaggaggcattaggatccagcagatctaaaatacatgagatgtacaaaacgttc
ggcgatcttggtgatgttgcccaagaatgccgccagaatcaaatgttacttgctcctcct
cgtcctctctcaattcgcgatgtgttttccacacttcgcaaactaagtgggatagcaggt
agtgggagtactggaaggagaaaaattcttgtcttgcatcttatccgttcttgcagagaa
atggagatgaaatttcttgttagaacactggtccgtaacttgcgtattggggtcatgatg
aagacaattttacctgcacttgcacatgctgttgttatagatggaaaatattcaaatagt
cctgtgctatctttggaaggcataaaaccacaattacaggaactttcaactgaagttgct
gaagcatacaatgtcattcctaatcttgatttgcttattccctctctcctgagagaaggc
actgcattttcagcctcgtccttagcaatgataactggcacccctatcccacctatgctt
gcaagaattactaacgggttgactcaatcactgaaattgtttaatggtagagcatttacc
tgtgagtacaagtatgatggtcagcgagcccagattcacagatcaaatgatggatctgtg
caaatattttcaaggcaaatgaaagagtcaacctctcgatttcctgatctggttggcatg
atcaaagagctgtgcagcatcgaagtatccagctttatacttgacgccgaggttgtggga
atcgataggaagaaaggaaacaaactgatgtcattccaagagctgtcttcaagagagaga
gggagcaagcactcctcaattgcaattcagaacataaaggtagacatttgtgtgtttgtt
tttgatatcatgttctgcaatggacaaagcctattgaactgctcacttcggcaaagaaga
aagtacatccacgacttgttccaggagaagccaggacattttgagttagctcagcaactt
actgtagaagcagatgaagcttctgtggataattctaccactttggagagaatgaacacc
tttttcaaaatggcatgccagtcttcttgtgagggtattatgctgaaaatactggatgtt
gatgctggatattctgcttccaagcgctgtgattcatggttaaaggttaagcgtgactat
gttggcttgggtgatagcctggacttggttccaattggtgcatggtatggaaatggtcgg
aaagctggatggtatagcccttttcttatggcgtgctacaaccctgaatacgaagagttc
caaagtgtctgccgcgttatgtctggtttctcagatgagttctataaagagatgaaggag
ttctattctggcgacagaatactgcccaagaaacctgtttactacaaaacagacgagctt
ccggagttgtggttttctgcggaacaggtttgggaaatccgaggtgcagacctcacgcta
tcccctgttcaccatgcggctattggtctggtccatccgtcgcgtgggatctcagtgagg
atgccgaggtacatacgctctcgtccagatcggagtccagaggattgtagcacggctact
gatgttgctagcttgttcaaagctcagacccggaagatggaggtcagcagcgatggccag
gacacaagtcactaa
DBGET
integrated database retrieval system
