Oncorhynchus gorbuscha (pink salmon): 124043160
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Entry
124043160 CDS
T07892
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein-like
KO
K12857
Prp8 binding protein
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124043160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ogo03041
]
124043160
Spliceosome [BR:
ogo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
124043160
Complex C
U5 SnRNP specific factors
124043160
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
NBCH_WD40
ANAPC4_WD40
Motif
Other DBs
NCBI-GeneID:
124043160
NCBI-ProteinID:
XP_046217368
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All DBs
Position
LG09:complement(11134777..11151809)
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AA seq
348 aa
AA seq
DB search
MIEQKKRPGDMALVPAGGVKRPRAELIAAAQSQQLVAMGPPRSSSLQAPIMLMCGHEGEV
YCCKFHPNGATLASSGYDRLILMWNVYGDCDNFATLKGHSGAVMELHYNTDGSLLFSAST
DKTVGVWDSETGERIKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKGAVHT
FQNTYQVLAVTFNDTSDQILSGGIDNDIKVWDLRQNKMIYGMHGHGDSLTGLCLSSEGSY
LLSNSMDNTVRIWDVRPFAPKERCVKIFQGNIHNFEKNLLRCSWSADGSKIAAGSADRFV
YVWDTTSRRILYKLPGHAGSVNEVAFHPEEPIVLSGASDKRLYMGEIQ
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
atgattgaacaaaagaagagaccgggggacatggcgttggttcctgccggtggagtcaag
aggcccagggccgagctgatcgctgcggcacagtcgcaacaactcgtggccatgggccct
cctcgcagctccagcctgcaggctcccatcatgttgatgtgtggccatgagggagaggtc
tactgctgcaagttccatcctaacggggccacactggcctcctctggctatgacaggctc
atcttgatgtggaatgtgtacggggactgtgataactttgccaccctgaagggacacagt
ggtgctgtgatggagcttcactacaacacagacggcagcctgctgttcagtgccagcaca
gacaagactgtgggagtgtgggacagtgagacgggtgagaggatcaagcgtctgaaaggc
cacacctccttcgttaactcctgctaccctgctcgccgcgggcctcagctcgtctgtacc
ggcagtgacgacggaaccgtcaagctgtgggacatccgtaagaagggggcggtccatacg
ttccagaacacctaccaggtgttggccgtcacattcaacgacaccagcgaccagatcctg
tctggaggcatcgacaacgacatcaaggtgtgggacctgaggcagaataagatgatctat
ggtatgcatggtcatggagattctctgactggcctctgtctgagctcagagggatcctac
ctcctctccaactccatggacaacacagtacgtatttgggacgtccgtccgttcgctccc
aaggagaggtgtgtgaagatattccagggaaacattcacaactttgagaagaaccttctg
aggtgttcctggtctgctgacggcagcaagattgcagcaggctcagctgacaggtttgtg
tatgtgtgggacaccacgtctcgtaggatcctgtacaagctgccaggccacgccgggtcc
gtcaacgaggttgccttccatcccgaggagcctattgtcctctctggcgccagtgacaag
agactctacatgggagagattcagtag
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