Opisthocomus hoazin (hoatzin): 104335919
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Entry
104335919 CDS
T08436
Symbol
SNRNP40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
KO
K12857
Prp8 binding protein
Organism
oha
Opisthocomus hoazin (hoatzin)
Pathway
oha03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oha00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104335919 (SNRNP40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oha03041
]
104335919 (SNRNP40)
Spliceosome [BR:
oha03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
104335919 (SNRNP40)
Complex C
U5 SnRNP specific factors
104335919 (SNRNP40)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
NBCH_WD40
ANAPC4_WD40
eIF2A
Cytochrom_D1
WDR54
PROPPIN
WD40_like
Motif
Other DBs
NCBI-GeneID:
104335919
NCBI-ProteinID:
XP_009940005
LinkDB
All DBs
Position
Unknown
AA seq
320 aa
AA seq
DB search
LTRLCHCLPQGPPRCSSLQAPIMLLSGHEGEVYCCKFHPSGSTLASAGFDRLILLWNVYG
DCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSC
YPARRGPQLVCTGSDDGTVKLWDIRKKAAVQTFQNTYQVLAVTFNDTSDQIISGGIDNDI
KVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRIWDVRPFAPKERCVKIF
QGNVHNFEKNLLRCSWSPDGSKIAGGSADRFVYVWDTTSRRILYKLPGHAGSVNELAFHP
EEPITLSASSDKRLYMGEIQ
NT seq
963 nt
NT seq
+upstream
nt +downstream
nt
ctcacccggctctgccattgcctcccgcagggcccaccacgctgctcctcgctgcaggcc
cccatcatgctgctctcggggcacgagggagaggtgtactgctgcaagttccaccctagc
ggcagcaccctcgcctccgccggcttcgacaggctcatcctgctgtggaacgtctacggg
gactgcgataactacgccaccctgaagggacacagcggggcagttatggagctgcactat
aacacagatggcagcatgcttttctcagcatccacagacaaaaccgtggccgtgtgggac
agcgagacgggagagagagtgaagagactgaagggccatacctcgttcgttaactcctgt
tacccagcgaggcgagggccccagctcgtctgcacaggcagcgatgacgggacggtgaag
ctgtgggatatcaggaaaaaagcggccgtccagacatttcagaacacgtaccaggtcttg
gctgtaactttcaatgacaccagtgatcagatcatctctggaggcatcgacaacgatatt
aaggtgtgggaccttcgccagaacaagctcacgtacaccatgagagggcacgcggactcg
gtgacaggcctcagcctgagctcggaaggctcctacctgctctccaacgccatggacaac
acggttcgcatctgggatgtgcgaccatttgcccctaaagagagatgtgtaaagattttc
caggggaatgtgcataattttgaaaagaatcttctgaggtgctcttggtccccagacggg
agtaaaatcgcagggggatcggctgaccggtttgtctacgtgtgggacaccacatccagg
aggattttgtacaagctgccaggccacgctgggtcggtgaacgagctggctttccatcca
gaggaacccattacactctccgcatccagcgacaaaaggctgtacatgggggagatccag
tga
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