Oncorhynchus keta (chum salmon): 118365792
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Entry
118365792 CDS
T09424
Name
(RefSeq) collagen alpha-1(XI) chain-like isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
118365792
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
oke00536
]
118365792
Glycosaminoglycan binding proteins [BR:
oke00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118365792
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
118365792
NCBI-ProteinID:
XP_052346994
EnsemblRapid:
ENSOKEG00005035025
LinkDB
All DBs
Position
32:complement(25316552..25398984)
Genome browser
AA seq
1873 aa
AA seq
DB search
MDRLKRTAACRRIPLFLIIMFHATSAQAADPIDVLRVLELSDHMEGVSMEAGLCTSRKDM
EETDMAYRIDKKIQLSAPTKQLFPDSLFPVDFSLMTTVRAKKDTQFFLLSVYDEQGVQQL
GLEVGRSPVFLYEDHQGQPSPELYPIFKKINLADGKWHRIAYSVEGKSVTLYLDCEKVQT
LELLRGDNPLVSTEGVIVFGTRLLDEEVFEGEIQQLLILEDAQAAADYCLHYIPDCDSPL
SYNRQAQNPEQTSQLKPDPMIQSNEPEEPMKRSKKDRKGKKDKKKRDKKGRGKKRKEGEA
GPEEEGFIQVSTVLPEKQSQETYYPTEKPSTMELFTPEAVTPSAAPDQTTIIPERPTHRP
DSDIEDPSVVSSALPESKVTEEEERLDKKPQMEEFDDNFYGDLYDDLVVSMVTVGPNISE
YEAVAYEDISNETENQEYEEYETYEDGYGFAEREGDDTWDGEASGRALKGEKGEPAIVEP
GTLVEGAVGPPGQEGIPGGPGPMGPRGPSGDPGDLGPPGRPGLAGVDGVPGPPGTMLMLP
FQHGGDSQKGPVVSAQEAQAQAILQQTKMSLKGPPGPLGLTGRPGPLGLTGPSGLKGDAG
DHGPRGPHGTPGPAGLNGKLGKRGRAGTDGGRGAPGETGGKGDRGFDGLPGLPGNKGHRG
ERGKPGPHGPAGESGEKGLDGPVGPTGQPGEPGARGLVGPRGSPGPPGQPGITGVDGVQG
SKGNLGPPGETGPSGQQGNPGLQGLAGSQGPIGLPGEKGPQGSGGLQGLSGIDGPTGHPG
REGPPGEKGLNGLPGTQGPVGYPGTRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKG
DRGDNGVTGGHGEDGPEGPKGQLGPLGEVGGAGIAGEKGKLGVPGLPGYPGRQGPKGSVG
FPGSAGVLGEKGRRGPSGQAGTGGQRGPNGARGGRGARGPTGKSGDKGTSGHEGPPGSTG
DQGPQGPQGRNGEAGPKGPNGAVGKDGLPGHPGQRGEPGFQGKTGPHGPTGVIGPQGKSG
ETGPNGDRGHPGSPGPPGEMGLPGAAGKEGSKGDAGPSGAPGKSGPAGLRGFRGSRGSPG
AMGIAGLKGGEGPTGLSGAGGATGEKGPSGAAGAIGQPGRSGGVGPGGPMGEKGEPGEKG
PIGPAGQDGAQGPMGLPGAAGPAGPPGEDGDKGETGGPGQKGSKGDKGESGPSGPIGIQG
PVGHPGLPGVDGEPGLRGQQGMYGPKGDEGARGHKGGTGPTGLQGMPGLPGEKGDSGHVG
TMGPPGQHGPRGPQGSIGGEGTAGQPGGVGQPGIVGEKGEEGEAGDPGPVGDTGAAGGKG
ELGEKGDSGPSGAAGPAGVRGMPGEDGPKGNPGPLGFPGDSGPPGEAGINGVDGGPGAKG
DNGDPGKAGPPGASGEPGPSGPPGRRGHLGAAGKEGKQGMKGAKGTNGVEGLVGKKGPVG
PQGHSGMPGPEGLRGIPGPGGEQGLNGPPGQTGPPGPMGPPGLPGLKGDPGRKGDKGHGG
LIGLIGPPGELGEKGDRGLPGNQGTQGTKGDGGKGGLPGPTGPPGPPGLSGAVGERGSKG
DLGAIGPQGDTGPAGSPGPPGPPATMVQPLPIRDHEGRRKRKRHSRMVQGGSAPYEEAEM
KMDLEQEVFLQADQPMLEEAEGMEEVFASLTSMKTEVELMRKPLGTFESPARTCKELMMI
QHGYRDGDYWIDPNQGCHRDSIKVFCNFTAEGDTCLYPDKRFETVKLAAWNKEKPGSWFS
QYRKGKQLQYSDSDGNPVHVVQLTFLKLLSATARQTFTYSCQNSAGWFDSATRSHQHAIR
FLGSNDEEMSQAKSPFIQATHDGCQFRKGQERTVLEIDSPRAELLPVIDVAPSDFGSSNQ
KFGFHVGPVCYNG
NT seq
5622 nt
NT seq
+upstream
nt +downstream
nt
atggaccgtttaaagaggacggcggcgtgcaggagaataccgctatttcttataataatg
ttccacgcaacttcggcacaagctgctgatcccatcgatgtgctgcgggtactggagctg
tcggaccacatggagggggtgtccatggaggctggcctctgcaccagcaggaaggacatg
gaggagacagacatggcctatagaatagacaagaagatccagctcagtgcacccaccaaa
cagctcttcccagactcgttgttccctgtggacttctccctgatgacaacagtgagggca
aagaaggacacccagttcttcctgctgtctgtgtatgatgagcagggtgtacagcagctg
gggctggaggtgggtcgctcgcctgtcttcctgtacgaagaccaccagggacagccctcc
ccggagctctaccccatcttcaagaagatcaacttggctgatggaaagtggcacagaata
gcctacagtgtggagggcaagtcagtcaccctgtacctggactgtgagaaggtgcagact
ctggagttactgagaggggacaatcccctggtcagcacggagggggtgatcgtgtttgga
acacgactactggacgaggaggtgtttgagggagagatccagcagttgttgattctggag
gacgcccaggcggcggctgactactgcctgcactacatccctgactgtgactctcccctg
tcctacaacaggcaggcccagaaccctgagcagacctctcaacttaaacctgatcccatg
atacaaagcaacgagccagaggagccaatgaaacgctccaaaaaagacaggaaaggcaaa
aaggacaaaaagaagcgtgacaagaaggggaggggcaagaagagaaaagaaggagaggcg
ggcccagaggaggagggtttcatccaggtgtccactgttttgcctgaaaaacaatctcaa
gaaacctactatcccactgaaaagccatctacgatggaactgttcactcctgaagctgtc
accccatctgcagcccctgaccagaccaccattatcccagagaggcccacacacaggcct
gactctgacattgaggacccctccgtggtgtccagtgcactgcctgagtcaaaggtcact
gaagaggaggagaggctggacaaaaagccccagatggaggagtttgacgacaacttctac
ggcgacctgtacgatgacctcgtcgtctccatggtaacagtgggtcccaatatcagcgag
tacgaggctgtagcgtatgaggacataagtaacgagacagagaaccaggagtatgaagag
tatgagacgtacgaggacggatatggctttgctgagagagagggggatgatacctgggat
ggagaggccagtggcagagcactgaaaggagagaagggagagcctgccatcgttgaaccg
ggtacactggtggagggagcagtcggccccccaggacaggagggtattccaggtggacca
ggaccaatgggcccccgaggacccagtggagacccaggtgatttgggtcctccaggacgt
cctggtttagctggggtggatggggtacctggtcctccaggaacaatgctgatgttacca
ttccaacatggtggtgattctcagaaggggcctgtggtgtcggcccaggaggcccaggct
caggccatcctgcagcagaccaagatgtcgttgaagggacccccaggtccactgggtctt
acagggcgacccggcccactgggtcttactggtccctctggacttaaaggtgacgctgga
gatcatggccccaggggtccccatggtaccccaggtcctgcaggactcaacgggaagtta
ggaaagaggggccgggccggaacggatggagggcgtggagcaccgggggagacggggggg
aaaggggacagaggcttcgacggactgccaggtctcccaggaaacaagggccacagaggg
gagagagggaagcctggaccacatgggcctgctggagagtcaggagaaaagggtttagat
ggacccgtagggccgactggacagcccggtgaacctggtgccagaggacttgtcggaccc
agagggtcccctgggccacctggccagccaggtattacaggtgtggatggagttcaaggg
tcaaagggcaacctggggccacctggagagacagggcccagcggtcaacaaggaaatcct
ggattacagggccttgctggttctcagggtcccatcggcctgccaggagagaagggtccc
caggggagcggtgggctgcagggactctctggtatcgacggccctactggccatccagga
agagaaggccctccaggagagaaggggctcaatggtttgcctggaacccaagggcctgtt
ggttatccaggaactcgcggtgtcaagggggctgatggagtgagaggtctgaaggggagt
aaaggagaaaagggtgaagatggcttccccgggttcaaaggtgacatgggcctcaaggga
gacaggggtgataacggggtcacaggaggtcatggagaggatgggccagaggggcctaag
ggccagttgggacccctaggagaggttggaggtgctggcatagctggagagaagggtaaa
ctgggtgtcccagggttgccaggatacccaggaagacaggggcccaagggatccgtgggg
ttccctggttctgccggagttctgggagagaaaggaagacggggtccatctggtcaagca
ggaactgggggtcagagaggtcctaatggtgccagaggggggagaggagcacgaggaccg
acaggaaagtcaggagacaagggcacctctggacacgaaggcccaccaggatccactgga
gaccagggaccccaaggaccacagggaaggaacggtgaggcaggacctaagggacctaat
ggagcagtaggaaaagacggactaccaggtcatccaggacagcgaggggagccaggcttc
caaggcaagactggtccacatgggccaacgggtgtgatcggaccacagggtaaatctggt
gagactggacctaacggcgacagaggacaccctgggtcaccaggaccccctggagagatg
ggtttacccggagcagcaggcaaggagggatccaagggagacgcgggtccgtctggagct
ccaggaaagagtggccccgctgggctccgaggcttcagagggagcaggggcagccctgga
gccatgggcattgctggactgaaaggaggagaaggacccaccggtctgtcaggagcaggg
ggagccactggggagaaagggccttctggagcggccggtgctattggtcagcctgggcgc
tccggtggggtcggccctggaggaccaatgggagaaaagggcgagccaggagagaagggg
cccatcgggccggctggacaggacggggcacaggggcctatggggctgcctggtgctgct
ggccccgctgggcctccaggagaggatggagacaagggcgagacaggaggaccaggccag
aaaggcagtaaaggagacaaaggagaatctggcccttcaggacctattggaatccaggga
cctgtcggccatccggggttaccgggtgtggacggggagccggggctgagaggccagcag
gggatgtacgggccgaagggagacgagggagcgagaggccacaaggggggcacaggaccc
actggactacagggcatgccaggactcccaggagagaagggagacagtggacacgtgggc
acgatgggccctccaggacaacatggccccagaggcccccaggggtccattggtggagag
ggcactgctggccagcctggtggagtgggccagcctgggatcgttggagagaagggggag
gagggagaggctggggacccgggaccagttggagacactggtgccgctggtggtaaaggg
gagctgggggagaagggtgactctggcccctccggagcagcaggacctgcaggagtcaga
ggcatgccaggggaggacggacccaaaggaaacccagggccccttgggttccccggagat
tctggaccccctggagaagcaggaatcaatggagttgacggtggaccgggagcaaaggga
gacaacggtgatcctgggaaagccggacccccaggagcctctggagaaccgggcccttcc
gggccccccgggagaaggggccacttgggagctgctggaaaagaagggaaacaaggaatg
aagggagcaaaggggaccaatggggttgagggtctggtggggaagaaagggccagtgggg
ccccagggacattcagggatgcctggcccggagggcctccgagggatcccaggccctggg
ggtgagcaagggttaaatggccccccaggccagacgggaccccctggacccatgggaccc
ccaggactgccaggtttgaaaggagacccgggcaggaagggagataaaggtcacggtggt
ctgatcggtctgatcggacctccaggagagctgggagagaagggagacagaggcctgcct
ggaaatcagggcacacaaggaaccaaaggagacgggggtaagggtggcctccctggcccc
accggccccccaggacccccgggactttctggtgcagttggtgagagaggatccaaagga
gacctgggcgccatcggaccccaaggagacactggccccgccggatcccccggaccccct
ggtccacctgccaccatggtccagccgctgcctatcagagaccacgagggccggaggaag
aggaagaggcactctaggatggtgcaaggaggctcagctccctacgaggaggcagagatg
aagatggatctggagcaggaggtgttcctgcaggcagaccagcccatgctggaggaggca
gagggcatggaggaggtgtttgcctccctcacctccatgaagacagaggtggagctgatg
aggaagcccctggggacctttgagagccccgcccgcacctgcaaggagctcatgatgatc
cagcatggctacagagacggtgactactggatcgaccccaaccagggatgtcacagggac
tccatcaaggtcttctgtaacttcaccgctgagggagacacctgtctctacccggacaag
aggtttgaaactgtgaagctagcagcctggaacaaagagaaaccagggagctggttcagc
caatacaggaaaggcaaacagctacagtacagtgactctgatgggaacccggtccacgtg
gtccagctgaccttcctgaaactgctgagtgccacggccagacagaccttcacctactcc
tgccagaactctgccggctggttcgacagcgccacccgcagccaccagcacgccatacgc
ttcctgggaagcaacgacgaggagatgagccaggccaagagccccttcatccaggcaaca
cacgacggttgccagttccgtaagggacaggagcggacagtcctggagatcgactccccc
agagcagagctgctgccagtcatagacgtggccccctcagactttggaagcagcaaccaa
aagtttggcttccacgtgggaccagtatgttacaacggttaa
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integrated database retrieval system
