Oncorhynchus keta (chum salmon): 118378731
Help
Entry
118378731 CDS
T09424
Name
(RefSeq) interferon-induced very large GTPase 1-like isoform X1
Organism
oke
Oncorhynchus keta (chum salmon)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
Pur_ac_phosph_N
Interfer-bind
RHD3_GTPase
Dynamin_N
MMR_HSR1
HMUDK_HMUD1
Motif
Other DBs
NCBI-GeneID:
118378731
NCBI-ProteinID:
XP_035621601
LinkDB
All DBs
Position
16:20437357..20473292
Genome browser
AA seq
2097 aa
AA seq
DB search
MEDRLKVKSNINLVLNEGLPPPGEIQFLSVTSDSVSLSWGSLEERTGPQKFRVTWKCDRE
VSSLRVKGVLNVKINGLEPGRRYEFNVATEGDNGNQSRRVSASVSTEVPTPRDLTIVQSG
ATAFTLKWNKALRLDQTPQSFLVSYSSPGTETKAANTTDCYIILCNLQLETQYIISVSTV
LKNGEQSEPVSTTICTKLPDPVGLKVDSVTISSANVSWSQPHGMDQTQHRYLISYQGTEK
ERWISTRYHSIVLSDLQPATEYSVTVCTELENGEQSQLVSTTFTTRVPSPEDLMVVQLQP
ISLSVKWTKAPGLDQTPQRFLVSYSSPGTEHRTAHTEDCHTTLSDLQPGTEYTISVSTVL
NNGEESELVSKTICTILPAPDQLTVDSVESTSAAVSWNQPPGLDQTQHHYQISYRCPGIK
PHITTTSSPSITLCDLKPATEYSVTVCTVLENGEQSPAMSTTFTTKVQAPGDLKVDQLKP
TSLTISWSKAHGMEKTPHHFIIRVARSLEGSKIQTQIAEPQEEYLEYCHRKCSDLQPGTE
YTVSVSTMLANGEQSEPVSTTICTKLSLEMYMQKVGLKQYFTQKLSLNTMLAVDGQMLED
NHAPTLQSLPMCFLKELMRVNVSARDVQSDDKDLMNPLDLITALFLCSESFLQQDIALKM
SMCQFAVPLLLPNCDTEQSTLMLWAMRDIVNKYRPHSMKDQKGYVEKSIVLTDLPMVSFV
RLGNSTLSKSQLLNDVLSCSQQNYNTFVHSNMPAGNIPRTISDGLVEISWYLPSGNPNID
VFTEPVAVANLRGDIQDFQTQFSFLCETSAAVFVFCDDLGSDSSILNLQKMKDRLFIVCN
SEAKSYDAATFEKHSGGIIRKDRQMNNAQLVKKLRSTVTDVMKANPHKTKVEEMRVVAHE
LGIPVDEDDEICLKAKKNAALITDQISCIPSYKDSQLPLQGETWKSLTALEKEEVKLKKA
GDKDIEIYKSELKQEKYELRKKQLSHGISDSMKHFMEGLRTSKEERSYFLKWMKLNLDNL
SRTRLSALREKYKELCQSTPGKKDLIADLDKQISNSSLGTEHFLREVGQMYEATMSSESS
ETPQQFQGLPGICAQLMLDGFPLELMDGDASNIPMKWISDVLQELHFLTMSNSKIRVVSV
LGVQSSGKSTLLNTMFGVQFSVSSGRCTRGAFMQLIKIKEELRDELKCDFIMVIDTVGLK
GLQSTHLTDNYQHDNELATLLVGLSDISIVNIAMENTTDMKDTLQIVAHAFLRMKEVGKK
PSCQFVHQNVADISAHDKNLRDRNCFLEQLNEMTAVASRLENAGDDTKFTDIIDYKPEDN
CYIPGLWHGSPPMAPVDKGYSEAVANFKRMLIYSLKKETPSAQTIPEFLEWIRSLWESVK
YENFIFSFRNSIVAEAYTKLCVEFNRWDWAFQKHMHSWLMKAERRIANYGLITSQQESGL
DDLLSSLKTEASNELQREGKTFIDNMTSYYKGEERNVCLVEKYKEEFSINAEICRRETDR
AVNNKLEAAVDLKKGTYQLGNIKKNNRDTLAKKVSDLVKEFSGDENPMNDKQLEKEFDNM
WDKTIKELTFKGLKPQNVSQDIYSDLEKHLGTQSRAVKDILDNSKYLKDCGLEKFKVKNE
HSIVYKILNKIESKESYIKMKCEIQDMADNIINQSERFVANKVKEKTDYNNTYIQALLEL
IKKNLHMNKELQISAEFEASLKIHICGNATREFQKMHDAFIKDNDPRQSLTNLKQQFLAD
FKDLFYKRDHCKRKAEEFTKHCLEPAVKEYITKSLGPDILDEILSNCSDVFSTRSSFQCS
MLKCLLSGNFQTFVKYTDYYEGFVFEFILNNTVEYLSKRSRTAKDISIITNMEVQHLKTI
SRQIKEAVEKSLQTDSDRPDEDGEGDVNFNLFIQDLHSELSSMLVIPTDTTGMTLENSKT
KEFSDMLLSSVEEMESRLRDEFHKDQDIFKKLDSLPDPPQEKLFNKLFGCGRQCPFCKAP
CDVEGESHIKHSALIHRPKGLGWCEKRGKLTTEICSQSVFSKWINALKCFLFHVEMTWIF
QSGNSQATNYWKFLFVKHNEEYAKLHNVLPASLPGDWSSITHEEALKRLMEMFRKDI
NT seq
6294 nt
NT seq
+upstream
nt +downstream
nt
atggaagacagactcaaggtgaagagcaacatcaacctggttttaaatgaagggcttccc
cctcctggtgagatccagttcctttcagtgacgtcggactccgtgtctctgagctggggt
tctcttgaggaacggacggggccacagaagttcagagtgacttggaagtgcgacagggaa
gtgagcagtctaagagttaaaggcgtgcttaatgttaaaataaatggcctcgaacctggt
agaagatatgagttcaatgtggctacagagggagacaatggcaaccaaagcagaagggtc
tcagcatctgtatcgacagaggtcccgacacctagagacttaacgatagtccagtctgga
gcaactgctttcactctaaaatggaacaaggctcttagactggaccaaacccctcagagc
ttcctcgtgtcctacagcagcccaggaacagagactaaagcagcaaatactacagactgc
tacataatattgtgtaatcttcaactggagactcagtacattatcagtgtctcaactgtt
ctaaagaatggggaacaaagtgaacctgtttctacaaccatctgcacaaaacttccagac
ccagttgggctgaaggtggactcagtaaccatctcatcagccaatgtgagctggagccag
cctcatggaatggaccaaacccaacaccgatacctgatatcttaccagggcacagagaag
gagcgatggatttctactcgatatcatagtattgttctctctgacctccaacctgccact
gagtactcagtcactgtctgcactgagttggaaaatggggaacaaagtcaacttgtgtca
acaaccttcaccacaagagtcccatcacctgaagacttgatggtagtccagttgcaacct
atttcactctctgtcaagtggacaaaggctcctggactggaccaaactcctcagcgtttc
ctcgtatcctacagcagcccaggaacagagcaccggacagcacatactgaagactgccat
acgacactctctgacctgcaacctggtactgagtacactatcagtgtctcaactgtgctg
aacaatggggaagagagtgaacttgtttctaaaaccatctgcacaattctcccagctcca
gaccagctgactgttgactcagtggaatccacatcagctgctgttagctggaaccagcca
ccaggattggaccaaacccaacatcattaccagatctcctaccgctgtccagggataaaa
ccacacatcactaccacatcttcacccagcatcactctctgtgacctgaaacctgctact
gaatactcagtcactgtctgcactgtgctggaaaatggggaacaaagtccagccatgtca
acaaccttcaccacaaaggtccaagcaccaggtgacttgaaggtagaccagctgaaacct
acctccctcaccattagttggagtaaggctcacggaatggagaaaaccccacatcacttc
atcatcagggtagccagaagcctagaaggatccaaaatccaaacccaaatagccgagccc
caagaagagtaccttgaatactgccacagaaaatgttctgacctgcaacctggtactgaa
tacactgtcagtgtctcaactatgctggccaatggggaacagagtgaaccagtctctaca
accatctgtacaaagctcagtctggaaatgtatatgcagaaagttggactgaaacagtat
ttcacacagaaactgtcgttgaataccatgctagcagtcgatggccagatgttggaggac
aaccatgctccaactctacagtccctaccaatgtgttttctgaaagaactgatgagggtg
aatgtgtcagcaagggatgtgcagtctgatgataaagatcttatgaaccctctagacctc
ataacagccctgtttctgtgttcagagagtttcctgcagcaggatattgccctgaaaatg
tccatgtgtcagtttgctgttcctcttctgctgccaaactgtgacacagaacaaagcact
ttgatgctgtgggccatgagggacatagtgaacaagtacaggcctcattcaatgaaagac
cagaaagggtatgttgagaaaagtattgtgctcactgacctccctatggtgtcatttgtt
agactgggaaacagcacattatcgaagtctcagcttctgaatgatgttctaagctgttct
cagcagaattacaacacctttgttcacagtaacatgccagctggcaacattccaagaact
atttctgatgggttagtggaaatcagctggtacctgcccagtggcaacccaaacattgac
gtcttcaccgaacctgtggctgtagctaatcttcgtggtgatatccaggattttcagacc
cagttctctttcctctgcgagacgtcagcagcagtgtttgtgttctgtgatgatttgggc
tctgacagcagtattctgaacctccagaagatgaaagatcgactgttcattgtctgcaac
tctgaggctaagagctatgatgcagcaacatttgagaaacactctggtggtataataagg
aaagacaggcaaatgaacaacgcacagcttgtgaagaagctccggtctacagtcacagac
gtcatgaaggcaaacccacacaaaactaaagtggaggaaatgcgtgttgttgcgcatgag
ttgggtatccctgtggatgaagatgatgaaatctgtctgaaagccaagaaaaatgcagct
ttaattacagatcaaatctcttgcataccaagctataaggacagccagctaccgttacag
ggagagacatggaaaagtctgactgcactggagaaagaggaggtgaaactgaaaaaagca
ggtgataaggacattgaaatttacaagagtgaactcaagcaagagaaatatgaactcagg
aagaagcagctgtctcatggcattagtgacagtatgaaacattttatggaaggtttgagg
acttccaaagaagagcgctcctatttcctaaagtggatgaagctcaatctggacaaccta
tcaaggacacgtctgtccgctctcagagaaaaatataaagagctgtgtcaaagtacccca
ggcaagaaagacctcattgccgatttagacaaacagatctcaaacagttccttaggaacc
gaacattttttaagagaagttggacagatgtacgaggcaaccatgtcctctgaaagcagt
gagactccacagcaatttcaaggactgccaggaatctgtgcccagttaatgttggatggg
tttccactggagttgatggatggtgatgcatcaaacatcccaatgaagtggatatcagat
gttctgcaggagctccactttttgactatgtcaaacagtaagatccgggtggtttctgtt
ttaggggtccaaagctctggaaagtccacgcttcttaacaccatgtttggagtccagttt
tccgtcagcagtggaagatgcaccagaggggccttcatgcagcttatcaaaatcaaagag
gaattacgggatgaactaaaatgtgacttcatcatggtcattgacacagtggggctaaag
ggacttcaatctacccaccttactgacaattatcagcatgataatgaactagccacactt
ttggtaggactgagtgacatctctattgtgaatattgctatggagaacaccacagatatg
aaagacaccctgcagattgtagcccatgccttcctcaggatgaaagaagtagggaaaaag
cccagttgtcagtttgtgcaccagaatgttgcagatatatctgctcatgacaaaaacctc
agggacaggaattgttttcttgagcagctgaatgagatgacagctgttgcaagcaggttg
gaaaatgcaggggatgacactaaattcactgacatcatagactacaaacccgaggacaac
tgttacatcccaggtctctggcatggcagtccacctatggcgcctgtcgataaaggttac
agtgaagctgtagccaatttcaaaaggatgttaatttattcattaaaaaaggagacccct
tcagcgcaaaccatccctgaattccttgagtggatcagaagtttatgggagtctgtaaag
tatgagaatttcatctttagttttcgtaacagtattgtggctgaggcatataccaagctg
tgtgtggagtttaatagatgggactgggctttccaaaaacatatgcacagctggctgatg
aaagcggaacgcagaattgcaaactatggcttaattacgtctcaacaggagtctggcctg
gatgacctcttaagtagtctgaaaactgaggccagcaatgagctacaaagagaaggaaaa
acatttattgacaatatgacttcctattacaaaggagaagagaggaatgtgtgtcttgtg
gagaagtataaggaagaatttagtattaatgcagagatttgcaggagagagacagacaga
gctgtaaataacaaactagaagctgcagtggacctaaaaaaaggcacctaccagttaggc
aacattaagaaaaacaacagggatactcttgccaagaaagtatctgaccttgttaaggaa
tttagtggagatgaaaatccaatgaatgacaaacaactggagaaagaatttgataatatg
tgggacaaaacaataaaggagctcacattcaaaggtctaaagcctcaaaatgtttcacaa
gatatctacagtgaccttgagaaacacttgggaacgcaaagtagggcggtcaaagatatt
ttggataattcaaaatacctgaaggattgtggacttgagaaatttaaagtaaaaaatgaa
cacagcatagtgtacaagatattgaacaagattgagtcaaaagagagttatataaaaatg
aagtgtgaaattcaagacatggccgataacatcattaaccagagtgagaggtttgttgcg
aacaaggtcaaagaaaaaacagactacaataacacttacatccaggcactattagaattg
attaagaagaaccttcacatgaacaaagaattgcaaatcagtgctgaatttgaagcatct
cttaagatacacatctgtgggaatgcaacaagagagttccagaaaatgcatgatgctttc
atcaaagacaatgatcccagacaaagcctgacgaacctaaaacaacagttcttggctgac
ttcaaggacctattctacaagagagaccattgtaaaaggaaggctgaagagttcaccaaa
cactgcctggaacctgcagtaaaggagtacatcaccaaatcccttggaccagacattttg
gatgaaattctttcaaactgtagtgatgttttcagcacaaggagttctttccagtgttcc
atgctaaaatgcttactatctggaaatttccagacattcgtgaagtacacagactactat
gagggatttgtatttgagttcattttgaataatacagttgaatacctttcaaagagaagc
aggacagcaaaggacatcagcatcattacaaacatggaggtccaacacttgaagacaatc
agtagacagataaaagaagctgttgaaaaatcactccaaactgactctgacagaccagat
gaagatggtgagggtgatgtcaattttaatctgtttattcaggatttacactcagaattg
tctagcatgctggttattcctactgatacaacagggatgactttagagaattccaagacc
aaagagttttctgacatgctattatcatctgttgaagagatggagagccgtctccgtgat
gaatttcacaaagatcaagatatattcaagaagttggacagtctacctgaccctcctcag
gaaaagctttttaataaattgtttggttgtgggagacagtgtccattctgcaaagctccc
tgtgatgtagagggggagagccatataaagcactcagctttgattcaccgacctaaagga
cttggatggtgtgaaaaaaggggaaaacttactacagagatatgctcacaatctgttttt
tccaaatggataaatgcattgaagtgttttctttttcatgttgagatgacctggatcttc
cagtcaggcaattcccaggccacaaactactggaagttcctctttgtgaagcacaatgag
gagtatgcaaagttgcacaatgtcttgccagcttctttgccaggagactggagttccatc
actcatgaagaagctttgaaaagattgatggagatgtttcggaaagacatttag
DBGET
integrated database retrieval system
