Oncorhynchus keta (chum salmon): 118385471
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Entry
118385471 CDS
T09424
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118385471 (prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oke03041
]
118385471 (prpf4)
Spliceosome [BR:
oke03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
118385471 (prpf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
ANAPC4_WD40
NBCH_WD40
PRP4
WD40_like
Motif
Other DBs
NCBI-GeneID:
118385471
NCBI-ProteinID:
XP_035628515
EnsemblRapid:
ENSOKEG00005011996
LinkDB
All DBs
Position
6:37034184..37042900
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AA seq
506 aa
AA seq
DB search
MSDDEEAPLVKKTRIFYGSLEEKERERLGREASGSGKDSVKAGIEAGNINISSGESLELE
ERVTERQSEVLADFERRKRARQITVSTDDAEVKACLRALREPITLFGEGPAERRERLRNI
LSVVGPDALKKSKKDDDKSKRSQEECQQTWYHEGPTTLKEARLWLARYSLPRAVKRLEDA
RAHREIPESTRTVRTQELHKTLRNLNNFCSQIGDDRPISFCQFSPNSKMLVTASWSGLCK
LWNVPDCTLVRTLRGHNTHVGAICFHPQATLTLEDSDVNMASCAADGSVKLWSLDSDVPV
ADIEGHSMRVARVAWHPSGRFLGTTCYDNSWRLWDLEAQEEILHQEGHSKGVHDMQFHPD
GSLAATGGLDSFGRIWDLRTGRCVMFLEGHLKEIYSIDFSPNGYHAATGSGDNTCKVWDL
RRRKCIYTIPSHQNLVSSVKFQPNNGHFLLTGAYDNTAKVWTHPGWSPLKTLAGHEGKVM
GVDMSPDGQLIATCSYDRTFKLWMSE
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacgatgaagaagctccgctggtgaagaagaccaggatcttctatggcagtttg
gaggagaaggagagggagaggctgggacgagaggcttctgggtcaggcaaagattctgtc
aaagcaggaatcgaggctggcaacattaacatctccagtggcgagtcccttgagcttgag
gaacgtgtgactgaacgccagtctgaggtattggctgactttgaacgcagaaagagagcg
agacaaatcacagtatccacagacgatgcagaggtcaaagcctgcttacgggccctcagg
gaaccaatcacactgtttggggaggggcctgctgagagacgagagaggctaaggaatatc
ctctctgtagtgggtccagatgcattgaagaaatcgaagaaggacgatgacaaatccaaa
cgctcccaagaggagtgtcagcagacatggtaccatgaagggccgaccactcttaaggag
gcaaggctttggttggccagatactctctgcccagggctgtgaaaaggttagaagatgcc
agagctcacagggagatcccagaatctacacggacagtcaggacgcaagaacttcacaag
acgctcaggaacctgaataacttctgcagtcagatcggtgacgacaggcctatatccttt
tgccagttcagccccaactccaaaatgctggtgactgcatcttggagtggcctgtgtaaa
ctgtggaatgttcctgactgtacccttgtccgtacccttcgaggccacaatacccacgtg
ggggccatctgttttcatcctcaggccactctgactctggaggactctgatgttaacatg
gcctcctgtgctgccgacggctccgtcaaactctggagtctggacagcgacgtgcctgtc
gctgacatcgagggccactccatgagggtggcgagagtagcctggcatccctctggaagg
ttcctgggcaccacctgctatgataattcgtggaggctgtgggacctggaagcacaggag
gagatcctgcaccaagagggacacagtaaaggagtccatgacatgcaattccaccctgat
ggatctctggcagctactgggggtctggattcatttggccgtatttgggaccttcggacc
gggcgctgtgtgatgttcctggagggccacctcaaagagatctacagcatcgacttctct
cccaacggctaccacgcagcaacaggaagtggggataacacctgtaaggtgtgggacctg
cgtcgcaggaagtgcatctacaccatcccctcccatcagaacctggtgtcctctgtcaaa
ttccagcccaataatggtcacttcctcctgactggggcctatgacaacacagccaaggtg
tggacccacccgggctggtcccccctgaagacgctggcgggtcacgagggaaaggtgatg
ggcgtggacatgtcccctgacggacagctcatcgccacctgctcttacgaccgcaccttc
aagctctggatgtcagaatga
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