Oncorhynchus kisutch (coho salmon): 109894138
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Entry
109894138 CDS
T09179
Name
(RefSeq) lysine-specific demethylase 2A-like isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
109894138
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oki03000
]
109894138
04121 Ubiquitin system [BR:
oki04121
]
109894138
03036 Chromosome and associated proteins [BR:
oki03036
]
109894138
Enzymes [BR:
oki01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
109894138
Transcription factors [BR:
oki03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
109894138
Ubiquitin system [BR:
oki04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
SCF complex
Target recognizing subunit (F-box)
109894138
Chromosome and associated proteins [BR:
oki03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
109894138
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
109894138
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
JHD
F-box-like
JmjC
F-box
Cupin_8
LRR_4
Motif
Other DBs
NCBI-GeneID:
109894138
NCBI-ProteinID:
XP_031684296
Ensembl:
ENSOKIG00005013786
LinkDB
All DBs
Position
LG7:complement(8335961..8355627)
Genome browser
AA seq
1304 aa
AA seq
DB search
MGGFAVATQDRSSYPENVSQQCKAPGVKTQQKPGSRLRRLARSTVLEQFYSIMVRSGTRR
RYHDDGISDDEIEGKRTFDLEEKLRSERFTSDRVKRMEGKDLTFEYIQRGGLRDPIIFEK
PDGLGIKMPDPDFSVNDVKIFVGSRRMIDVMDVSTQKGIEMSMAQWRRYYETPPSQRDKL
YNVISLEFSHTKLENLVQRPTSVDIIDWVDNMWPRHLKERQRDSTNSITDMQYPKVQKYC
LMSVQGCYTDFHIDFGGSSVWYHILRGGKVFWLIPPTPQNLELYEDWVLSGKQGDIFLGD
KAQDCQRIELKQGYTFMIPSGWIHAVYTPVDTLVFGGNFLHSFNIPMQLNIYSIEDRTRV
PAKFRYPFYYEMCWYVLERYLFSLTNTSYLTPDFQKHSLGIGLTRDPSACESVNGHTQRE
DEEEAPPTRGSKPGVKVHLTPFELEGLWNLLGKLESLPSQKNCVPAGIHNAPALLHDIRA
LLKEHANDIPKLSYTGKPIVKWPTRPPWYQPPPPPPPVARPKLSATVVTPRPQKPASSMS
VLRRRRVRCKRCEACVRTECGDCNFCRDMKKFGGPGKLKQTCVLRQCLAPGLPLSVVCEL
CGEGNQEGGEGPVFALTLMECSNCAQIAHPACLKVTGEGVVNTDLPSCWECPKCVLGITD
TEVKGDKNKMLHTKRKSSSYLDGRIAKIYRRGGHSDDSGSDDDDDDDDEDDDDDEGSRGG
GGGAGRKMSGPRPRGSGSASRRGYGTGRRGIWRGSSHRGAGRGSGLAPHSSLKMRRGRGG
LGVGRGDRERGGRVRLRGGTRMQRRRDESEEDDNDDDDDDDEDDDSEEDPQHHHRHKDHR
QRRRRRRTDDEEDDDEDDDEEDSSARDLEGEDEDVDDEDEEDDENQSDSEPEPPVLLVSD
LNDDFLNGSYLTVTLQRPPRAKRHPGSIVPKLEAAMSPRTHGGGPGYVQHKTLGKTRHKN
GTVAAGNGLAQPAKNPVGRPPRHRINNPHGDTADRERDTASPSSSDSSASPTPPPHSSHS
PSSLLSLPSFKDVGNEKGGEKEVWVAVFLYLSRAELASCMTVCKAWYKWSCDKRLWSGVD
VSRCPSLSSQALQGIIKRQPTSLDLSWTPVSKKQITLLIHRLPGLKELMIAGCSWSSMSA
LSTPSLPCLRTLDLRWAEGVKDTQIRDLVTPPGCDSRSRLRGCVVLRLAGLDISDSTLRL
ILRHMPLLERLDLAHCGDLTDQSVCLLTAAGTHTRNTLTEINLSGCNKLTDGCLAYLKRA
SGLALLDLRGCKGVTRRGCEGFISDLSHCVLFCMTEEKLIQRIS
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
atgggcggctttgctgtagcaacccaagacagaagtagctacccagaaaacgtgtctcag
caatgcaaagctccgggagtcaagacacagcagaagccaggaagcagactacgcagactg
gcccggtcgaccgtccttgaacagttctactcaatcatggtgcggtcgggcacgaggcgg
cgctaccatgacgatggtatctcggacgacgagatcgaggggaagaggacctttgacctg
gaggagaagttgaggagcgaaaggttcacctcggacagggtgaaacgcatggaggggaaa
gacctcacgtttgagtacatccaaagaggtgggttgagggacccgatcatctttgagaag
ccagatggattgggtatcaagatgccagatccagacttcagtgtgaatgacgtcaagata
tttgttggcagcaggcgtatgatcgatgtgatggatgtgagcactcagaagggtatagag
atgtctatggcccagtggcgacgttactacgagacgcccccctcccagagggacaaactc
tacaacgtcatcagcctggagtttagccacaccaaactggagaacctggtccagaggcct
acatcggtggacatcatagactgggtggacaacatgtggcctcggcacctgaaggagaga
cagagagactccaccaactccatcacagacatgcagtaccccaaagtgcagaagtactgt
ctaatgagtgtgcagggctgctacacggacttccacattgacttcggaggttcctctgtc
tggtaccacatactgcggggaggcaaggtgttctggctgatcccgcccacgcctcagaac
ctggagctgtatgaggactgggtgttgtcagggaaacagggagacatcttcctgggagac
aaggcccaggactgtcagaggatagagctgaagcagggctataccttcatgatcccttca
ggttggatccatgcagtctacactccagtggacaccctggtgtttggggggaactttctc
cacagcttcaacatccccatgcaactcaacatctacagcattgaggacaggacacgggta
ccagctaagttccgttacccgttctactatgagatgtgttggtacgtgttggagagatac
ctcttcagtctgaccaacacttcctacctcacgcctgacttccagaaacattccctgggc
atcggtcttacaagagacccctccgcctgtgagtccgtcaacggccacacccagagggag
gatgaagaggaggctcccccgacgcggggctctaagcccggggtgaaggttcacctgacg
ccctttgagctggaggggctgtggaacctgctggggaagctggagtcgctgccctcacag
aagaactgtgtcccggcgggcatacacaatgctcccgcgctgctgcacgacatcagggcc
ctgctgaaggagcatgctaatgacatccccaaactgtcctacactgggaagcccatcgtc
aagtggcccactaggccgccgtggtaccagcctcctccccctcctcccccggtggctcgt
cccaagctgtctgccacggtggtgaccccgcgaccccagaagcccgcctcctccatgtcc
gtgctgcggcggcggcgtgtgcggtgtaagcgctgcgaggcgtgcgtcaggacggagtgc
ggggactgtaacttctgcagggacatgaagaagttcggcgggccggggaaactcaaacag
acctgcgtgctccgacagtgtctggcgccgggtctgcccctgtcagtggtgtgtgagctc
tgtggagaggggaaccaggagggaggagaggggccagtcttcgccctcaccctcatggag
tgttccaactgtgcccagatagcccaccccgcctgcctcaaggtaacaggggagggtgtg
gtgaacacagatctgcccagctgctgggagtgtcccaaatgtgttctgggaatcaccgat
actgaggtgaaaggggacaagaataaaatgttacacacgaaacgcaagtcttcttcgtat
ctcgacggccgcatagctaagatctaccgtcgcggtggtcacagcgatgactcgggcagc
gatgatgatgacgacgacgatgatgaggatgatgatgatgatgaaggctccaggggcgga
ggaggcggcgcgggaaggaagatgtctggaccacgccctcgcggcagtggttccgcctct
cgaagaggctacgggactgggaggcgaggcatttggagaggctcctcccacagaggggca
ggccgtgggagcgggctggcccctcactcctccctgaagatgaggcgtggcagagggggg
ctgggggtggggcgaggggacagggagagaggcggaagagtgcgtctccggggaggcacc
aggatgcagagacgcagggacgagtcagaggaggacgacaacgatgatgatgatgacgac
gatgaagatgacgacagcgaggaagatccgcagcatcaccaccggcataaagaccaccgg
caacgccgcaggcggaggagaacggacgacgaggaagacgacgatgaagacgatgatgag
gaagacagctcggcccgggacctggagggggaggatgaggacgtggacgatgaggatgag
gaagacgacgagaaccagtcagactccgaaccagagcctcctgttctcctggtgtctgac
cttaacgacgacttcctaaatggctcgtacctgaccgtgaccctacagcgccccccaagg
gctaaacgccaccccggctccatcgtacccaagctggaggccgccatgtctcccagaacc
cacggcggcggtccaggttatgtccagcataaaaccctcgggaagacgcggcacaaaaac
ggcacggtcgccgccggcaatggcctggcccagcccgccaagaatccagtcggccggccg
cctcgtcaccgtatcaacaatccccacggcgacacagcagacagggagagggacactgcc
tctccttcctcctcagactcctcggcctcccccacccctcctccccactcctcccactct
ccttcctcgctcttgtcgctgccctccttcaaggatgtaggaaatgagaaaggaggggag
aaggaggtgtgggtggcggtgttcctttacctgagcagagccgagctggctagctgtatg
actgtctgtaaggcctggtacaaatggagttgtgacaagcgtctctggagtggtgtggat
gtatcgcgttgtccctcgctctcctcccaggccctgcagggcatcatcaaacgccagccc
acctccctggacctctcctggacccctgtttccaagaaacagatcaccctgctcatacac
cgccttccaggtctgaaggagttgatgatagcaggttgctcctggtcatccatgtcagcc
ctgtccacccccagcctgccgtgcctccgtacccttgacctgcgctgggcagagggggtt
aaagacacccagatcagggacctggtcacaccaccaggctgtgacagtcggtctcggctg
cgtggctgtgtggtgctgcgtctagccggcctggacatcagtgactccaccctgaggctg
attctccgtcacatgcccctgctagagcggctggacctggcccactgcggagacctcacg
gaccagtccgtctgcctgctcaccgccgccggcacacacacgcgtaacacactcacggag
atcaacctctctggctgtaacaagctgacggacggctgtctggcgtacctgaagagggcg
tctggcctggcgctgctggacctgcggggctgcaaaggtgtgacgcggcggggctgtgag
ggcttcatctcggacctctctcactgcgtcctgttctgtatgacggaggagaaactcatc
cagaggatatcataa
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