Oryzias latipes (Japanese medaka): 101166453
Help
Entry
101166453 CDS
T02443
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
101166453 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ola03400
]
101166453 (lig4)
Enzymes [BR:
ola01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
101166453 (lig4)
DNA repair and recombination proteins [BR:
ola03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
101166453 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT_2
BRCT
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
101166453
NCBI-ProteinID:
XP_004066615
UniProt:
H2LGF6
LinkDB
All DBs
Position
2:17088691..17095186
Genome browser
AA seq
912 aa
AA seq
DB search
MDDAPSKSDAASEQTVAAQVPFSHLCTTLEKIQKAKLRPEKSKILGDFIGSWRNFHAALH
KNNPRTADSFYPAMRLIVPPFERERMAYGIKESMLAKLYIDVLGLPKNGPEANKLLNYRA
PTTSQGEAGDFAGMAYFVLKKRCTSQGNLSIKEVNDFLDSVALNNASKKKDLMRKSLLHL
ITQSSALEQKWLIRMILKDMKLGISKETVLQAFHPDAAELYNVNTDLNKVCQQLHNPSVS
LSDVSIGLFSAFKPMLAAVANIRNVEKQMGNSPFYIETKLDGERIQLHKDGDVYKYFSRN
AFEYTQQFGGSPLEGSLTPYIHNVFKSHVANCILDGEMMAYNPTTETFMQKGSRFDIKKL
MDDSELQTCFCVFDVLLVNDQKLGKEALRKRHEILQTVFTPAKGRMHLVPKSEARSVQEV
VSALNDAIDSREEGIMVKDPLSIYKPDKRGEGWLKIKPEYVDSLMDELDLLIVGGYWGKG
RRGGMMSHFLCAVAEAPKPGEKPSVFHSLCRIGSGYTMKELYDLGLKLAKHWKVYRRSDP
PPSLLCSTEKPEVYIEPCNSIIVQVKAAEIIPSDMYRTNCTLRFPRIEKIRDDKEWHQCM
TLAELDQLRSKASGKLASRHLRIDDGDDQPQKKKKRKLPTKAKKAVSILDHFKPQDLSAV
SKETDMFEDVEFCILNGTEDHPKCELEKGVASCGGIVVQNPGRETYCVIAGAENMRVKNL
ISSDQHDVVWASWLLECLERKEVAPWQPRHMIHMSPTTREHFAKEYDPHGDSYFLDTDGQ
QLREVFGRIGDAEVEISVAQVEERYGFSDLPTSMFRPFTAYADVFARVGEPDTLIPATCL
EIRALEFRFHGGRVVERLEEGVSHVLVEEESRLLELRTLRRCFRRKFKIVKHTWVTDSIK
NGVLLDDREYLV
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atggacgacgcgccttccaaaagcgatgcagccagcgagcagacggtggcggcgcaggtt
cccttcagtcacctgtgcacgaccttagagaagatccaaaaggccaaactgcgtccagag
aaatccaagatccttggggatttcatcgggtcatggcgaaacttccacgccgccttgcac
aaaaacaacccccgaaccgcggactccttctatccggccatgcgcctcatcgtcccgccg
tttgaacgcgagcgaatggcgtacggcatcaaggagagcatgctggcgaagctgtacatt
gacgtgttgggcctgccgaagaacgggccggaggccaacaagctgctgaactaccgcgct
ccgaccacgtcccagggtgaagccggagacttcgccggcatggcgtacttcgtgctgaag
aaacgatgcaccagccagggaaacctcagcatcaaagaggtcaacgacttcctggactcg
gtggcgctgaacaacgccagcaagaagaaggatctcatgaggaagagtctgctccacctc
atcacccagagctccgccctggagcagaagtggctcatccggatgatcctgaaggacatg
aagctcggcatcagcaaggagaccgtgctccaggccttccacccggacgccgcggagctt
tacaacgtcaacacagacttgaacaaggtgtgccagcagctccacaacccttcggtgtct
ttgagcgacgtctccatcggactcttctccgctttcaagccgatgctagccgcggtggct
aacattcgcaacgtggagaaacagatgggcaacagccccttttacatcgagacgaagctc
gacggcgagcgcatccagctccacaaggatggggacgtctacaagtacttcagccgaaac
gcctttgagtacacgcagcagttcggaggctcgccgctggaaggttccctgacgccgtac
atccacaacgtcttcaaaagccacgtggcgaactgcatcctggacggcgagatgatggcg
tacaaccccaccacggagaccttcatgcagaaggggagccggttcgacatcaagaagctg
atggacgactcggagctgcagacgtgcttctgcgtgttcgacgtgctgctggtcaacgac
cagaagctcggcaaagaggcgctgaggaagcgccacgagatcctccagacggttttcacg
cccgccaaggggcggatgcatctggttccgaagagcgaagccagaagcgtgcaggaggtg
gtgagcgcgctcaatgacgccatcgacagccgggaggaggggatcatggtgaaggacccg
ctgtccatctacaaaccggacaagcgcggggaaggctggctgaagataaagcccgagtac
gtggacagcctgatggacgagctggacctgctgatcgtcggaggttactgggggaaaggg
cggcgggggggtatgatgtcacacttcttgtgcgccgtcgccgaagctccaaagccgggc
gagaagccgtcggtcttccactccctgtgccgcatcggatcgggttacaccatgaaagaa
ctgtacgacctgggcctcaagctggccaaacactggaaggtgtacaggaggagcgacccg
ccaccgtccctcctgtgcagcaccgagaaacccgaagtctacatcgagccctgcaactcc
atcatcgtccaggtgaaggcggcggagatcatcccgagcgacatgtacaggaccaactgc
acgctgcgcttccccaggatcgagaagatccgagacgacaaggagtggcaccagtgcatg
accctggccgagctggaccagctccgcagtaaggcgtccgggaagctggcctcgcgccac
ctccgcatcgacgacggcgacgaccagccgcagaagaagaagaagcgcaagctgccgacc
aaagccaagaaagcggtcagcatcctcgaccacttcaagccccaagatctgtccgccgtc
tccaaggagacggatatgttcgaggacgtggagttctgcatcctcaacggcacggaggac
cacccaaaatgcgagctggagaaaggcgttgccagctgtggcgggattgtggtccaaaac
cccgggcgggagacctactgcgtgatcgccggcgcggagaacatgcgcgtgaagaacctg
atctcctcggaccagcacgacgtggtgtgggcctcctggctgctggagtgtctggagcgg
aaggaggtggcgccgtggcagcctcgccacatgatccacatgtcccccaccaccagggag
cacttcgccaaggagtacgacccccacggcgacagctacttcctggacacagacgggcag
cagctgcgggaggttttcgggcgcatcggcgacgcggaggtggagatcagtgtggcccag
gtggaggagcgctacggcttcagcgaccttccgaccagcatgttcagacccttcacggcg
tacgccgacgtgtttgcccgcgtcggagagccggacacgctcatacctgccacctgcctg
gagatcagggcgctggagttccgtttccacggagggcgcgtggtggagaggctggaggaa
ggagtttcccacgttctggtggaagaggagagccgacttctggagctgaggactctgagg
cgctgcttcaggaggaagttcaagatcgtcaaacacacgtgggtcaccgactccatcaaa
aacggcgtcctgctggacgacagagagtacttagtttga
DBGET
integrated database retrieval system
