KEGG   Oryzias latipes (Japanese medaka): 101167483Help
Entry
101167483         CDS       T02443                                 

Gene name
lig1
Definition
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
ola  Oryzias latipes (Japanese medaka)
Pathway
ola03030  DNA replication
ola03410  Base excision repair
ola03420  Nucleotide excision repair
ola03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ola00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    101167483 (lig1)
   03410 Base excision repair
    101167483 (lig1)
   03420 Nucleotide excision repair
    101167483 (lig1)
   03430 Mismatch repair
    101167483 (lig1)
Enzymes [BR:ola01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     101167483 (lig1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     101167483 (lig1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     101167483 (lig1)
DNA replication proteins [BR:ola03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    101167483 (lig1)
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     101167483 (lig1)
DNA repair and recombination proteins [BR:ola03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     101167483 (lig1)
   NER (nucleotide excision repair)
    Other NER factors
     101167483 (lig1)
   MMR (mismatch exicision repair)
    Other MMR factors
     101167483 (lig1)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID: 101167483
NCBI-ProteinID: XP_023820669
LinkDB All DBs
Position
17
AA seq 993 aa AA seqDB search
MQRSIASFFQPKSKDKDIQKKAIDEPVKKIAKSPLKVQNGVQEVDSPIKKSGKRCRQIVD
SDEDEAPLVKEQAEEQGGRKAPAKTEKKDDVFKAVPTPLSPPPAPTTPSTPATPATPASS
ASPGTPSTSDSTSPSGISKRKTARKMFPKRRLEEGRSEKAEGQSAEETGQQHKRPRVESS
TSSAGNTDEPMEEEAAAVVPGELLENEKTAEGEKAKEKEEEEEEVEEKSTDEGGEKAEKK
EEKQKTSDERGPEKVTTEETQEGKGSPKSPIVEKKQKDAKEQKDKEAAKKAPISSFFAPR
KAAAKTEKPEKSDGEKKTSAMRKNSEEDRKEPKGDSTPGQTEFDPSRPNYHPVDHACWKH
SQKVPYLAVARTFEKIEEDSGRLRNIETLSNLFRSVLLLSPDDLLCCVYLCLNQLGPAYL
GMELGVGETVLMKAVAQATGRQLDKIKAEAQEKGDLGLVAESSRSNQRMMFQPASLTVGS
VFKKLKEIASMSGNSAMNKKIDIIKGLFVACRFSEARYIVRSLAGKLRIGLAEQSVLSAL
SQAVCLTPPGQDFPPAVIDASKGMSAESRRAWIEEKSLILKQTYCEMPNYDIILPVLLKE
GIDQLPNHCKLTPGVPLRPMLAHPTKGVGEVMKKFDEAAFTCEYKYDGERAQIHILESGE
VRIFSRNQEDNTSKYPDIIARIPKVKKESVVSCVLDSEAVAWDHEKKQIQPFQVLTTRKR
KDVDASEIKVQVCVYAFDLLYLNGESLVRQPLCRRRALLRDSFMEVEGEFMFARSIDSDS
TDAIAEFLEQSVRDSCEGLMVKTLEKDATYEIAKRSHNWLKLKKDYLDGVGDTVDLCVIG
AYLGKGKRTGTYGGFLLACYDDENEEFQSVCKIGTGFKDEDLEQHYKFLKEHILPKPRAY
YRVDQSAEPDVWLDAVQVWEVKCADLSLSPVYKAAMGLVDPEKGISLRFPRFLRIRDDKK
PEDATSGSQMADLYKKQQQIQNQGDKADPEDYY
NT seq 2982 nt NT seq  +upstreamnt  +downstreamnt
atgcagcgaagcattgcatcatttttccagccaaagagcaaagataaggacattcagaag
aaggcgatcgacgagccagtgaaaaaaattgccaaaagccccctcaaggtgcagaatggt
gtgcaggaagtggattcccccatcaagaagagtggcaaacgctgccgtcagatcgtagac
agcgatgaagacgaggccccgctagtgaaggagcaagcagaggagcaaggaggaaggaaa
gctcctgcaaaaacagaaaagaaggacgatgtgttcaaggcagttcccacccctctgtcc
ccaccacctgctccaaccacaccctcaacccctgctactccagctactcccgcctcttcg
gcttcaccgggaacgcccagcacctcggactccacctcaccgtcgggaatcagcaaacgc
aagactgcgaggaagatgtttcccaagaggaggctggaggagggcagaagtgagaaagca
gaggggcagtctgcagaggagacgggtcagcagcacaaacggcctcgcgtggagagcagc
accagcagtgcagggaacacggatgaacccatggaggaagaagcagcggctgtcgtccca
ggtgagctgctagaaaacgaaaagactgcagaaggagaaaaggccaaagaaaaagaagag
gaggaggaggaggtagaggaaaagagcaccgatgagggaggagagaaagctgagaaaaag
gaagaaaagcagaagacgtctgatgagcgagggcctgagaaggtcaccacagaggagacg
caagagggaaaagggagcccaaaaagtccaatcgtggaaaaaaagcagaaggacgcaaag
gagcagaaagataaggaggcggccaagaaagctccaatcagcagtttctttgctcccaga
aaagcagcagcgaagacggagaaaccagagaagagtgacggagagaagaagacgagtgcc
atgaggaagaactcagaggaagaccgtaaagaacccaaaggtgattccaccccaggacaa
acagagtttgacccctccaggccaaactaccaccctgtggaccacgcctgctggaagcac
agccagaaagtgccgtacttggcagtggctcgcacctttgagaaaattgaagaggactct
ggcaggctgaggaacattgagactctgtcgaatctgtttcgctccgtgctgctgctctct
ccagacgacctgttgtgctgtgtgtacctgtgcttgaaccagctgggcccagcctacctg
gggatggagctcggcgttggggagacggtgctgatgaaagcggttgcccaagcaactgga
cggcagttggacaaaatcaaagcagaggcccaggagaaaggagatttgggccttgtggct
gaaagttcccgtagcaaccagcggatgatgttccagcctgccagcctgacagtggggagc
gtttttaagaaactgaaggaaattgcaagcatgagtggaaactcggccatgaataagaaa
atcgacatcatcaaaggcctctttgtggcgtgccgcttttcagaggcccgctacatcgtc
aggtctctggctgggaagctgaggatcggccttgctgagcagagcgtgctctctgctctg
agccaagctgtctgcttgaccccacctggacaagatttccctcctgctgtgatcgatgcg
agtaaggggatgagtgccgagagcaggcgggcctggatcgaagagaagagtctcattctc
aagcagacgtactgcgaaatgcccaattacgacatcatcctccccgttctgctaaaggag
ggcattgaccagctccccaatcactgcaagctgactccaggcgtcccgctgaggcccatg
ctggctcaccccactaaaggtgttggagaggttatgaagaagtttgacgaggcggcgttc
acctgcgagtacaaatacgacggagagcgcgcacagattcacattctggagagcggcgaa
gtccgaatattcagccggaatcaggaagacaacaccagcaaataccccgatatcatcgct
cgcattcccaaggtgaagaaggaatctgtggtgtcctgcgtcctggactcagaagctgtg
gcctgggaccatgaaaagaaacagatccagcccttccaggttctcaccactcgaaagaga
aaggatgtggatgcctctgagatcaaagtccaggtgtgtgtgtacgcctttgacctcctc
tacctcaacggcgagtccctggtgcgacagcctttgtgtcggcgtcgggctctgctgagg
gacagtttcatggaggtggagggggagtttatgttcgcccgctccatcgacagcgacagc
actgacgccatcgccgagttcctggagcagtccgtccgagactcctgcgagggcctgatg
gtgaaaactctggagaaggatgcgacctatgagattgccaagcgttcccataattggctc
aagttgaagaaggactacctggacggcgttggtgatacggtggacctttgcgtgatcgga
gcctatctggggaaagggaaaaggaccggcacctatggtggcttcctgctggcgtgctac
gacgatgaaaacgaggagttccagtcggtttgcaagatcgggacaggcttcaaggacgaa
gatctggagcagcattacaagtttttgaaggagcacatcctgcccaaacctcgggcctat
taccgcgtcgaccaatcagccgagcccgacgtgtggctggacgccgtgcaggtgtgggag
gtgaaatgtgccgacctctcgctgtcgcccgtctacaaggccgccatgggactggtggat
ccggagaaaggcatctctctgcggtttccccgcttccttcggatcagagatgacaagaaa
cccgaggacgccacctctggatctcagatggctgatttgtacaagaagcagcaacagatt
cagaatcagggggataaggctgacccggaggactattactga

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