Oryzias latipes (Japanese medaka): 101167483
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Entry
101167483 CDS
T02443
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03030
DNA replication
ola03410
Base excision repair
ola03420
Nucleotide excision repair
ola03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
101167483 (lig1)
03410 Base excision repair
101167483 (lig1)
03420 Nucleotide excision repair
101167483 (lig1)
03430 Mismatch repair
101167483 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ola03032
]
101167483 (lig1)
03400 DNA repair and recombination proteins [BR:
ola03400
]
101167483 (lig1)
Enzymes [BR:
ola01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
101167483 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
101167483 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
101167483 (lig1)
DNA replication proteins [BR:
ola03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
101167483 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
101167483 (lig1)
DNA repair and recombination proteins [BR:
ola03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
101167483 (lig1)
NER (nucleotide excision repair)
Other NER factors
101167483 (lig1)
MMR (mismatch excision repair)
Other MMR factors
101167483 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
101167483
NCBI-ProteinID:
XP_023820669
LinkDB
All DBs
Position
17:2526197..2600578
Genome browser
AA seq
993 aa
AA seq
DB search
MQRSIASFFQPKSKDKDIQKKAIDEPVKKIAKSPLKVQNGVQEVDSPIKKSGKRCRQIVD
SDEDEAPLVKEQAEEQGGRKAPAKTEKKDDVFKAVPTPLSPPPAPTTPSTPATPATPASS
ASPGTPSTSDSTSPSGISKRKTARKMFPKRRLEEGRSEKAEGQSAEETGQQHKRPRVESS
TSSAGNTDEPMEEEAAAVVPGELLENEKTAEGEKAKEKEEEEEEVEEKSTDEGGEKAEKK
EEKQKTSDERGPEKVTTEETQEGKGSPKSPIVEKKQKDAKEQKDKEAAKKAPISSFFAPR
KAAAKTEKPEKSDGEKKTSAMRKNSEEDRKEPKGDSTPGQTEFDPSRPNYHPVDHACWKH
SQKVPYLAVARTFEKIEEDSGRLRNIETLSNLFRSVLLLSPDDLLCCVYLCLNQLGPAYL
GMELGVGETVLMKAVAQATGRQLDKIKAEAQEKGDLGLVAESSRSNQRMMFQPASLTVGS
VFKKLKEIASMSGNSAMNKKIDIIKGLFVACRFSEARYIVRSLAGKLRIGLAEQSVLSAL
SQAVCLTPPGQDFPPAVIDASKGMSAESRRAWIEEKSLILKQTYCEMPNYDIILPVLLKE
GIDQLPNHCKLTPGVPLRPMLAHPTKGVGEVMKKFDEAAFTCEYKYDGERAQIHILESGE
VRIFSRNQEDNTSKYPDIIARIPKVKKESVVSCVLDSEAVAWDHEKKQIQPFQVLTTRKR
KDVDASEIKVQVCVYAFDLLYLNGESLVRQPLCRRRALLRDSFMEVEGEFMFARSIDSDS
TDAIAEFLEQSVRDSCEGLMVKTLEKDATYEIAKRSHNWLKLKKDYLDGVGDTVDLCVIG
AYLGKGKRTGTYGGFLLACYDDENEEFQSVCKIGTGFKDEDLEQHYKFLKEHILPKPRAY
YRVDQSAEPDVWLDAVQVWEVKCADLSLSPVYKAAMGLVDPEKGISLRFPRFLRIRDDKK
PEDATSGSQMADLYKKQQQIQNQGDKADPEDYY
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagcattgcatcatttttccagccaaagagcaaagataaggacattcagaag
aaggcgatcgacgagccagtgaaaaaaattgccaaaagccccctcaaggtgcagaatggt
gtgcaggaagtggattcccccatcaagaagagtggcaaacgctgccgtcagatcgtagac
agcgatgaagacgaggccccgctagtgaaggagcaagcagaggagcaaggaggaaggaaa
gctcctgcaaaaacagaaaagaaggacgatgtgttcaaggcagttcccacccctctgtcc
ccaccacctgctccaaccacaccctcaacccctgctactccagctactcccgcctcttcg
gcttcaccgggaacgcccagcacctcggactccacctcaccgtcgggaatcagcaaacgc
aagactgcgaggaagatgtttcccaagaggaggctggaggagggcagaagtgagaaagca
gaggggcagtctgcagaggagacgggtcagcagcacaaacggcctcgcgtggagagcagc
accagcagtgcagggaacacggatgaacccatggaggaagaagcagcggctgtcgtccca
ggtgagctgctagaaaacgaaaagactgcagaaggagaaaaggccaaagaaaaagaagag
gaggaggaggaggtagaggaaaagagcaccgatgagggaggagagaaagctgagaaaaag
gaagaaaagcagaagacgtctgatgagcgagggcctgagaaggtcaccacagaggagacg
caagagggaaaagggagcccaaaaagtccaatcgtggaaaaaaagcagaaggacgcaaag
gagcagaaagataaggaggcggccaagaaagctccaatcagcagtttctttgctcccaga
aaagcagcagcgaagacggagaaaccagagaagagtgacggagagaagaagacgagtgcc
atgaggaagaactcagaggaagaccgtaaagaacccaaaggtgattccaccccaggacaa
acagagtttgacccctccaggccaaactaccaccctgtggaccacgcctgctggaagcac
agccagaaagtgccgtacttggcagtggctcgcacctttgagaaaattgaagaggactct
ggcaggctgaggaacattgagactctgtcgaatctgtttcgctccgtgctgctgctctct
ccagacgacctgttgtgctgtgtgtacctgtgcttgaaccagctgggcccagcctacctg
gggatggagctcggcgttggggagacggtgctgatgaaagcggttgcccaagcaactgga
cggcagttggacaaaatcaaagcagaggcccaggagaaaggagatttgggccttgtggct
gaaagttcccgtagcaaccagcggatgatgttccagcctgccagcctgacagtggggagc
gtttttaagaaactgaaggaaattgcaagcatgagtggaaactcggccatgaataagaaa
atcgacatcatcaaaggcctctttgtggcgtgccgcttttcagaggcccgctacatcgtc
aggtctctggctgggaagctgaggatcggccttgctgagcagagcgtgctctctgctctg
agccaagctgtctgcttgaccccacctggacaagatttccctcctgctgtgatcgatgcg
agtaaggggatgagtgccgagagcaggcgggcctggatcgaagagaagagtctcattctc
aagcagacgtactgcgaaatgcccaattacgacatcatcctccccgttctgctaaaggag
ggcattgaccagctccccaatcactgcaagctgactccaggcgtcccgctgaggcccatg
ctggctcaccccactaaaggtgttggagaggttatgaagaagtttgacgaggcggcgttc
acctgcgagtacaaatacgacggagagcgcgcacagattcacattctggagagcggcgaa
gtccgaatattcagccggaatcaggaagacaacaccagcaaataccccgatatcatcgct
cgcattcccaaggtgaagaaggaatctgtggtgtcctgcgtcctggactcagaagctgtg
gcctgggaccatgaaaagaaacagatccagcccttccaggttctcaccactcgaaagaga
aaggatgtggatgcctctgagatcaaagtccaggtgtgtgtgtacgcctttgacctcctc
tacctcaacggcgagtccctggtgcgacagcctttgtgtcggcgtcgggctctgctgagg
gacagtttcatggaggtggagggggagtttatgttcgcccgctccatcgacagcgacagc
actgacgccatcgccgagttcctggagcagtccgtccgagactcctgcgagggcctgatg
gtgaaaactctggagaaggatgcgacctatgagattgccaagcgttcccataattggctc
aagttgaagaaggactacctggacggcgttggtgatacggtggacctttgcgtgatcgga
gcctatctggggaaagggaaaaggaccggcacctatggtggcttcctgctggcgtgctac
gacgatgaaaacgaggagttccagtcggtttgcaagatcgggacaggcttcaaggacgaa
gatctggagcagcattacaagtttttgaaggagcacatcctgcccaaacctcgggcctat
taccgcgtcgaccaatcagccgagcccgacgtgtggctggacgccgtgcaggtgtgggag
gtgaaatgtgccgacctctcgctgtcgcccgtctacaaggccgccatgggactggtggat
ccggagaaaggcatctctctgcggtttccccgcttccttcggatcagagatgacaagaaa
cccgaggacgccacctctggatctcagatggctgatttgtacaagaagcagcaacagatt
cagaatcagggggataaggctgacccggaggactattactga
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