Oryzias latipes (Japanese medaka): 101169122
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Entry
101169122 CDS
T02443
Name
(RefSeq) polyadenylate-binding protein 1-like
KO
K13126
polyadenylate-binding protein
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03015
mRNA surveillance pathway
ola03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101169122
09123 Folding, sorting and degradation
03018 RNA degradation
101169122
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ola03019
]
101169122
03041 Spliceosome [BR:
ola03041
]
101169122
Messenger RNA biogenesis [BR:
ola03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
101169122
mRNA cycle factors
Stress granule specific factors
101169122
Spliceosome [BR:
ola03041
]
Complex C
Other components
Complex C specific factors
101169122
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
PABP
RRM_5
RRM_3
RRM_occluded
HATPase_c
Motif
Other DBs
NCBI-GeneID:
101169122
NCBI-ProteinID:
XP_004073850
UniProt:
H2LCX2
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All DBs
Position
11:7186443..7200239
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AA seq
631 aa
AA seq
DB search
MNPGAPSYPIASLYVGDLHQDVTEAMLYEKFSPAGAIVSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGQPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSRGYGFVHFETHDAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAREFTNVYIKNFGEDMDDEKLKEIFSKFGNATSVRVMTDESGGGRGFGFVSFEN
HEDAQKAVDEMNGKELNGRIMFVGRAQKKMERQMELKRRFEQMKQDRTTRYQGVNLYVKN
LDDGIDDERLRKEFSPFGSITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLITQYMQRVANARAAANPVMNPYQPAPPSGFIMTAIPQAQSRS
AYYPTAGQMAQLRPGPRWTTQSVRPQHFQNMPGVMRPPRPRPQNFSTVRASSQVPPMMNT
QRVAAQSSGPRHPVATAATHVRGGPQYKYSTGVRNPQQHVATQPQVTLQPAVHIQGQEPL
TASMLAAAPLQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPESLRS
KVDEAVAVLQAHQAKEVAQKPATNSTAGPSV
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccggcgctcccagttaccccatcgcctctctgtatgtgggggatctccatcaa
gatgtgaccgaggccatgctgtacgagaaattcagcccggccggagccatcgtctccatc
cgggtatgtcgggacatgatcacccggaggtccctgggatatgcctatgtcaacttccag
cagccggcggacgctgagcgtgctctggataccatgaactttgacgtgattaaaggccag
ccggtacgcatcatgtggtcacagcgggatccatcgctgagaaagagtggcgtgggaaac
atcttcatcaagaatcttgacaagtccatcgacaacaaggctctttatgataccttctct
gctttcggcaacattctttcctgcaaggtggtttgtgacgaaaatggctctagaggctac
ggctttgtgcattttgagactcatgatgcggctgaacgagccattgagaaaatgaatggc
atgctgctcaatgaccgaaaagtatttgttgggcgttttaaatcccgcaaagagcgcgag
gctgagctgggcgcccgagccagagagttcaccaacgtgtacatcaaaaactttggtgaa
gacatggatgatgagaaactgaaggagatcttcagcaaattcggaaatgccacgagtgtt
cgagtcatgactgatgagagtggcgggggtcgaggcttcgggtttgttagctttgaaaac
catgaggatgcccagaaggctgttgacgaaatgaacggaaaggagctgaacgggaggatc
atgtttgttggacgagcccagaagaagatggagcgccaaatggagctgaagcgcagattc
gaacagatgaaacaagaccgcacgacccgttaccaaggcgtcaacttgtacgtgaagaac
ctggacgacggcattgatgacgaacgcttacgcaaagagttctcaccatttggctcgatc
acaagtgccaaggtgatgatggaaggcggccgcagcaaaggcttcggcttcgtctgcttc
tcgtccccggaagaagccacgaaggctgtgacggaaatgaacggacgcatagtcgccacc
aagccgctgtatgtagccctggctcagaggaaggaggagcggcaagctcacttgattact
cagtacatgcagcgcgtggccaacgcccgcgccgcggcaaaccccgtcatgaacccctac
cagcccgctccgccctctggcttcatcatgaccgccattcctcaggcgcagagtcgttct
gcgtactacccaaccgccggccagatggctcagctccgcccgggcccccgctggactaca
caaagtgttcgaccacaacatttccagaacatgccaggagtgatgcgtccaccaagacca
cgcccccagaacttcagcacagtgcgagcttcctcccaggtgcccccgatgatgaacacc
cagcgtgtcgccgcccagagcagcggcccccgtcacccagttgccactgcagccactcat
gtccgtggagggcctcagtacaagtactcaacaggagttcgtaatccccagcagcacgtc
gcaactcagccgcaagtcactctgcagcctgcagtccatattcagggccaggaacccctg
actgcctccatgctggctgccgctccactccaggaacagaaacagatgctgggcgagcgg
ctgttcccattgatccagaacatgcatcccagccttgcaggcaaaatcactggaatgctc
ctggagatcgacaactcggagctgctccacatgctggagtccccggagtctctccgttca
aaggtggatgaagccgtggctgtgctgcaggctcaccaggctaaagaggtggcacagaag
ccggcgactaattcaaccgcaggcccaagtgtctga
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