Oenanthe melanoleuca (Eastern black-eared wheatear): 130250894
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Entry
130250894 CDS
T09236
Symbol
COL12A1
Name
(RefSeq) collagen alpha-1(XII) chain isoform X1
KO
K08132
collagen type XII alpha
Organism
oma
Oenanthe melanoleuca (Eastern black-eared wheatear)
Brite
KEGG Orthology (KO) [BR:
oma00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
oma00535
]
130250894 (COL12A1)
Proteoglycans [BR:
oma00535
]
Extracellular matrix (ECM) proteoglycans
Others
130250894 (COL12A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
VWA_2
Pur_ac_phosph_N
Collagen
Interfer-bind
DUF4998
Copine
Toxin_R_bind_N
Motif
Other DBs
NCBI-GeneID:
130250894
NCBI-ProteinID:
XP_056342994
LinkDB
All DBs
Position
3:complement(29414132..29513469)
Genome browser
AA seq
3122 aa
AA seq
DB search
MKTALCSAVAALCAAALLSSIEAEVNPPSDLNFTIIDEHNVQMSWKRPPGAIVGYRITVV
PTNDGPTKEFTLSPSTTQTIISDLIPDAEYVVSIASYDDREESLPVFGQLTIQTGGPGIP
EEKMIEAQLQRCSISAMTDLVFLVDGSWSVGRNNFGYILDFMVALVSAFDIGEEKTRVGV
VQYSSDTRTEFNLNQYFRRSDLIDAIKRIPYKGGNTMTGEAIDYLVQNTFTESAGARKGF
PKVAIVITDGKAQDDVEIPARELRDIGVEVFSLGIKAADAKELKLIASQPSLKHVFNVAN
FDGIVDIQNEIILQVCSGVDEQLGELVSGEEVVEPPSNLVATQVSSKSVRITWDPSTSQI
TGYRLQFIPMIAGGKQHVLSVGPQTTALNVKDLSPDTEYQINVYAMKGLTPSEPITIMEK
TQPVKVQVECSRGVDVKADVVFLVDGSYSIGIANFVKVRAFLEVLVKSFEISPRKVQISL
VQYSRDPHMEFSLNRYNRVEDIIQAINTFPYRGGSTNTGKAMTYVREKVFVTSKGSRPNV
PRVMILITDGKSSDAFKEPAIKLRDADVEIFAVGVKDAVRTELEAIASPPADTHVYTVED
FDAFQRISFELTQSVCLRIEQELAAIRRKSYVPAKNMVFSDITSESFKVSWSPAGSEVLS
YLIKYKVAVGGEEFIVSVPASSTSSVLTNLLPETTYAVSVISEYEDGDGPPLDGEETTLE
VKGAPRNLKITDETTDSFVVGWTPAPGNVLRYRLVYRPLTGGERRQVTVSANDRSTTLQN
LIQDTRYEVSVVPEYQSGPGNSLNGYAKTDEVRGNPRNLRVSDATTSTMMLSWDAALGKV
QQYFITYTPVAGGETKEVTVKGDTTSEVLKGLDQATRYALTVSALYASGAGDALSGEGET
LEERGSPRNLVTTDITDTTVGLSWTPAPGTVNHYRIVWKSLYDDTMGEKTVPGNTVDAVI
EGLEPETKYRFSVYAAYSSGEGDPVEGEAFTDVSPNARTVTVDNETENTMRVTWQPSPGK
VLSYRVNYRPRSGGRQMSGRVSGPATSIVLKRLKPRTTYDITVVPIYDFGHGKSRKGEGT
TASPFKPPRNLRTSDSTMSSFRVTWEPAPGRVKGYKVTFHPTEDDGSLGELIVGPYDSTV
VLEELRAGTTYKVNVFGMFDGGESNPLVGQEMTTLSDTTTEPFLSRGLECRTRAEADIVL
LVDGSWSIGRPNFKTIRNFIARIVEVFDIGPDKVQIGLAQYSGDPRTEWNLNSYRNKQSL
LEAVANLPYKGGNTLTGMALDFILRNNFRPAAGLRPRARKIGVLITDGKSQDDVVTPSRK
LRDEGVELYAIGIKNADESELKQIATDPDDIHAYNVADFSLLATIVDNVTTNLCNSVKGP
GDLPPPSNLVISEVTPRSFRLRWSPPPESVDRYRVEYYPTSGGSPKQFYVSRMERTTVLK
DLQPETEYVVNVFSVVEDESSEPLIGRETTLPISSVRNLNVYDIGSTYMRVRWEPLNGAT
GYLLTYEPVNATVPATEREMRVGPSVNEVQLVDLIPNTEYTLTAYVLFGDMTSDPLTTQE
VTLPLPGPRGLKIQDVTHSTMNVVWDPAPGKVRKYILRYKIADDADVKEVELDRLKTSIT
LSDLSSRTLYNIKVVAVYDEGESIPTNAEALTQSVPAPVNLRITDITTNSFRGTWDHGAP
DVSLYRITWGPYGRGDKQETILNGDENSLVFENLNPDTLYDVSVTAIYPDESESEELIGS
ERTLPLVPITTQAPKSGPRNLQVYNATSHSLTVKWDPASGRVQRYRIIYQPISGDGPEQS
TTVGGRQNSVVIQKLQPDTPYAITVSSMYADGEGGRMTGRGRTKPLTTVKNLLVYDPTTS
TLNVRWDHAEGSPRQYKVFYGPTAGGAEEMTTVPGNTNYVILRTLEPNTPYTVTVVPVFP
EGDGGRTSDTGRTLERGTPRNIHIYNPTPNSMNVRWEPAPGPVQQYRINYAPLSGPRPSE
SIVVPGNTRDVILERLTPDTAYSINVIALYADGEGNPSQAQGRTLPRSGPRNVRVYDETT
NSLSVQWDHADGPVQQYRIIYSPTVGDPIDEYTTVPGIRNNVILQPLQSDTPYKITVVAV
YEDGDGGQLTGNGRTVGLLPPQNMYITDEWYTRFRVSWDPSPSPVLGYKIVYKPVGSNEP
REFFVGEVTSYTLHNLSPSTTYDVNVYAQYDSGMSIPLTDQGTTLYLNVTDLTSYKVGWD
TLCIRWSPHRSATSYRLKLNPADGSRGQEITIRGSETSHCFTGLSPDTEYNATVFVQTPN
LEGPPVSMREHTVLKPTEAPTPPPTPPPPPTIPPARDVCRGAKADIVFLTDASWSIGDDN
FNKVVKFVFSTVGAFDLINPAGIQVSFVQYSDEAKSEFKLNTFDDKAQALGALQNIQYRG
GNTRTGKALTFIKEKVLTWESGMRRGVPKVLVVVTDGRSQDEVRKAATVIQHSGFSVFVV
GVADVDYNELAKIASKPSERHVFIVDDFDAFEKIQDNLVTFVCETATSTCPLIYLEGYTS
PGFKMLESYNLTEKHFASVQGVSLESGSFPSYVAYRLHKNAFVSQPIREIHPEGLPQAYT
IILLFRLLPESPNEPFAIWQITDRDYKPQVGVVLDPASKVLSFFNKDTRGEVQTVTFDND
DIKKIFYGSFHKVHIVVTSSNVKIYIDCSEILEKPIKEAGNITTDGYEILGKLLKGDRRS
ATLEIQNFDIVCSPVWTSRDRCCDLPSMRDEAKCPALPNACTCTQDSVGPPGPPGPAGGP
GAKGPRGERGLTGSSGPPGPRGETGPPGPQGPPGPQGPNGLSIPGEPGRQGMKGDAGQPG
LPGRSGTPGLPGPPGPVGPPGERGFTGKDGPTGPRGPPGPAGAPGVPGVAGPSGKPGKPG
DRGTPGAPGMKGEKGDRGDIASQNMMRAVARQVCEQLINGQMSRFNQMLNQIPNDYYSNR
NQPGPPGPPGPPGAAGTRGEPGPGGRPGFPGPPGVQGPPGERGIPGEKGERGTGSQGPRG
LPGPPGPQGESRTGPPGSTGSRGPPGPPGRPGNAGIRGPPGPPGYCDSSQCASIPYNGQG
FPEPYVPESGPYQPEGEPFIVPMESERREDEYEDYGVEMHSPEYPEHMRWKRSLSRKAKT
KP
NT seq
9369 nt
NT seq
+upstream
nt +downstream
nt
atgaagacagcgctgtgctcggcagtcgctgctctgtgtgcagccgccctcctctcctcc
atcgaggctgaagttaatccaccatcagacttgaattttacaattatagatgaacataat
gttcaaatgtcatggaaaaggccaccaggtgcaatagtgggttacagaataactgtggtt
ccaacaaatgatggacctactaaagaatttactctttcacctagcactacccaaactatc
atatcagatcttatacctgatgcagagtatgttgtatcaatagcttcttatgacgacaga
gaggagagtctacctgtttttggccagctgacaattcagacaggcggcccagggatacca
gaggagaagatgattgaggctcaattacaaagatgctccataagtgcaatgacagattta
gttttcctggtagatggttcatggagtgtaggaagaaataactttggatatatcctggac
ttcatggttgcccttgtatcagcttttgatattggggaagaaaagacgagagttggagtt
gttcagtacagttcagatacaagaacagagttcaatttaaatcagtatttcagaagaagt
gatcttattgatgcaattaaaaggataccttacaaaggtggcaacacaatgacaggtgag
gctattgattaccttgttcaaaacaccttcactgagtctgctggagcaagaaaaggcttt
cccaaagtagcaattgtcattactgatggaaaagctcaagatgatgtagaaattcctgca
agagagcttcgtgacataggagttgaagttttttccttgggtatcaaagcagcagatgca
aaggaactcaagctaattgcatctcagccgtcactgaagcatgtgttcaatgtggctaat
tttgatggaattgtggatatacagaatgaaattatcttgcaagtgtgctctggtgttgat
gaacaactaggtgaactggttagtggggaagaagtggtggagcctccttcaaatctggtg
gccactcaggtctcctcaaagtctgttagaatcacttgggatccatccacaagccaaata
actggctatcgtctgcagttcattccaatgatagctgggggaaaacagcatgtactgagt
gtgggtcctcagactactgctctgaatgttaaagatctctctccagacacagagtatcaa
attaatgtttatgcaatgaaaggactgactcccagtgagccaataactataatggaaaaa
acacaaccagtaaaagttcaagtagagtgctcacgtggtgtggatgtaaaagctgatgtt
gtgtttttagtggatggttcctacagcattggtattgccaattttgtaaaagtaagagcc
tttttggaagtgttagttaaaagctttgagatatcacctcgaaaagtacagataagtctt
gtccagtacagcagagatccccatatggagttttctttgaacagatacaacagagttgaa
gacataattcaggctattaacaccttcccctacagaggtggatctaccaacacaggcaaa
gcaatgacatatgtgagggagaaagtatttgttaccagcaaaggatcaagaccaaatgtg
ccgagagtcatgattcttatcactgatgggaaatcatcagatgcttttaaagaacctgca
attaagctgagggatgcagatgtagaaatttttgcagttggtgtgaaggatgcagtgcgt
acagagttggaagcaatagcatcgccccctgcggacacccatgtttacacagtggaagat
tttgatgcttttcaaagaatatcatttgaacttacacagtctgtctgtctacgaattgag
caggagctggctgctataaggagaaaatcttatgtacctgcaaagaacatggtcttttct
gacataacatcagagagtttcaaagtaagctggtctccagctggatctgaggttttgtcc
tatctcattaaatataaagtagcagtcggtggtgaagaattcattgtttcagtaccagct
tcaagtaccagctcagttctcactaacttactccctgaaactacttatgcagtcagtgtg
atttctgaatatgaagatggtgatggccctcccttggatggagaggaaaccaccttagaa
gttaaaggtgctcctcgaaacttaaagataacagatgaaactactgatagctttgtagtt
ggctggactccagctccaggaaatgtcctacggtacaggcttgtttatagaccacttact
ggaggagaaaggagacaagtgactgtctcagcaaacgataggtcaactactctgcagaat
ttgatccaagatacaagatatgaagtgtctgttgttcctgagtatcagtctggacctggg
aattcattgaatggatatgcaaaaactgatgaagtccggggaaatccaaggaatttgaga
gtttctgatgctacaacatcaacaatgatgctgtcttgggatgctgctcttggcaaagtg
cagcagtacttcataacatacactccagtcgcaggaggtgaaactaaggaagtgactgtt
aaaggtgacactacctctgaagtgctgaaaggcctggaccaagccactaggtatgcactg
actgtgtctgccttgtatgcctctggagcaggagacgccctttctggagagggagaaaca
cttgaagagcgtggctcaccacgtaatttggttaccacagacataactgacactacagtt
gggttatcatggacaccagctccaggaacagttaaccattacaggatagtatggaaatca
ctttatgatgataccatgggagagaagacagtccctggaaatacagtggatgctgtgata
gaaggcttggagccagagactaaatacaggttttcagtatatgcagcctacagcagcgga
gaaggagacccagtagaaggagaggcttttactgatgtgtcaccaaatgccaggactgta
acagtagacaacgagacagaaaacacaatgagagttacgtggcagccttctcctgggaaa
gtcttgtcctaccgtgtgaactacagaccacgcagcggaggaagacaaatgtctggaaga
gtcagtggtcctgccaccagcatagtgctgaagagactcaagccccgaactacctatgac
atcactgtggttccaatttatgattttggacatgggaaatcaagaaaaggagaaggaaca
acagcctctccctttaagccacctcgaaatctgagaacttctgattcaactatgtcaagt
ttccgagtaacctgggagccagccccggggagagtgaaggggtacaaagtaactttccac
cctactgaagatgatgggagtcttggagaattaatagtggggccatacgacagcacagtg
gtattggaggagcttagggcaggaactacctataaggtaaatgtttttgggatgtttgat
ggaggagagagcaaccctctggttggacaagagatgaccaccctttcagatactactacg
gagccatttttatctagaggtttagaatgtagaaccagagcagaagctgatattgtgctg
ctggtggatggctcatggagtatcgggaggccaaattttaaaaccatcaggaacttcatt
gcccgtattgttgaagtttttgatattggacctgacaaagtacagattggtcttgcacag
tatagtggtgatcccaggacagaatggaatctcaattcttacagaaacaaacagtctttg
ttagaggctgtagccaacttgccatacaaaggaggcaatactctaacaggaatggctttg
gatttcatcttgcgaaacaacttcagaccggctgcaggcttaaggcccagagctcgcaaa
attggtgttctcatcactgatggcaaatcacaagatgatgtagtcaccccttcaagaaaa
ctcagagatgagggagtggaactgtatgcaattggtattaaaaatgcagatgaaagtgaa
ttgaagcagattgcaacggatccagatgacatccatgcttacaatgttgcagatttctcc
ctcctggctaccattgttgataatgtaaccacgaatctgtgtaacagtgtgaaaggtcca
ggtgatttgccacctccttcaaatttagttatttcagaagtgacacctcgttctttcagg
ctgagatggagcccacctcctgagagtgttgatagatacagagttgaatattatcctacc
tctggaggtagccctaaacagttttatgtaagtaggatggaaagaacaacagttctgaaa
gatctgcaacctgaaacagaatatgtggttaatgtgttttctgtggtagaagatgaaagc
agtgaacctctgatcggcagggaaacaactttgccaatctcttcagttagaaacttgaat
gtttatgacattggatcaacttatatgcgagtgagatgggaacctctcaacggagctact
ggttatttgttaacatacgaacctgtgaatgctacagtcccagccacagagagagagatg
cgtgtgggaccgtcagtgaatgaggtgcagctggtagatctcatccccaacactgagtac
actctaacagcttacgtgttgtttggggatatgacgagtgacccactcaccacacaagaa
gtgacgttacctttgcctggacccagaggtttaaaaattcaagatgttactcacagcacc
atgaatgtcgtttgggatcctgctccaggaaaagttcgaaaatacatcctaagatacaaa
atagctgatgatgctgatgtaaaggaggtggaacttgacagactcaaaaccagcattact
ctctctgacctttcctcccgaacactgtacaatataaaagttgttgctgtatatgatgaa
ggggaatccataccaacaaatgcagaagctctcactcagtctgtgccagcaccagtcaat
ctcagaatcacagatataaccacaaatagtttcaggggtacttgggatcatggagctcca
gatgtctctctttatagaataacatggggtccctatggaagaggagacaaacaggagact
atcttaaatggggatgagaatagtttggtctttgaaaatttgaatccagatacattatat
gatgtctcagttactgccatctatcctgatgaatcagaaagtgaagagctcattggcagt
gaaagaacattacccttggtacctatcactacacaagccccaaagagtggcccacgaaac
cttcaggtgtacaatgctacttcacacagtttgactgtcaaatgggatcctgccagtggt
cgggtgcagagatacaggatcatttaccagcctatcagtggggatggccctgaacagtcg
actactgttggagggcgacagaacagtgtggtgatacagaagctgcagcctgacacacca
tatgctattactgtgtcatccatgtatgcagatggtgaggggggacgaatgacaggacga
ggcagaaccaaacctctcaccactgtgaagaacttgctagtttatgacccaaccaccagt
actttgaacgttcgatgggatcatgcagaaggaagtcctcgccagtacaaagtgttttat
ggacctacagctggaggtgcagaagaaatgaccacagtaccaggaaatacaaactatgtc
atcctgaggactcttgaacccaacacaccttacactgtaactgtggttccagttttccca
gagggggatggtggacgtacctctgacactggacgcactttggagagaggaacaccaaga
aacattcacatttacaaccccacaccaaacagcatgaacgtccgttgggaacctgctcca
ggtccagtacagcaatatagaattaattatgctccactgtctggcccaaggccatcagaa
tctattgtggtgccaggcaacactcgtgatgtgattctggagcgcttgactcctgacact
gcttactcaattaatgttatagctctgtatgcagatggagaggggaatccaagccaagca
cagggaagaacattgcctcgcagcggtccaaggaacgtgagagtatatgatgagactaca
aacagcctttctgtacaatgggaccatgctgatgggccagtccagcagtacagaatcatt
tattcacccactgtgggagaccctattgatgaatatacaacagttcctggtataaggaat
aatgtgatactacaaccactacaatcagatacgccatataaaatcactgttgttgctgtg
tacgaagatggagatggtggacaactgactggaaatggcagaactgttggcctgcttcct
cctcaaaatatgtatatcactgatgaatggtatacacgtttcagagtttcctgggatcct
tcaccatcccccgttcttggctataaaattgtgtacaaacctgtgggttcaaatgaaccc
agggagttttttgtgggagaagtgacttcctacactttgcataatctgtctcccagtact
acttatgatgtgaatgtttatgcccagtatgattctggaatgagcatacctttgacagat
caaggcactacattatatttgaatgtcactgacctaacaagttacaaagtgggttgggat
actctctgtatccggtggtctcctcatcggtcagcaacttcctacagactgaagctaaac
ccagctgatggttccagaggacaggaaatcacaatccgtgggtcagaaacgagccactgt
tttactggcctctccccagacacagaatacaatgctactgtctttgttcagacccctaac
cttgaaggacctccagtctctatgagggagcatacagtcctcaaacctactgaggcacca
actccaccacctacacctcctccacctcccacaatccctccagctcgggatgtatgcaga
ggtgccaaagcagacatagtattcttgactgatgcttcctggagtattggtgatgataat
ttcaacaaagtagtgaaatttgtttttagtacagtaggagcctttgatttaatcaatcct
gctgggatccaggtttcgtttgtgcagtacagtgatgaggcaaaatctgaatttaaactg
aacacatttgatgacaaagcccaggctctgggagctcttcaaaatattcagtacagagga
ggaaacactaggacaggcaaagccctaacattcatcaaagagaaggttttgacttgggag
agtggcatgaggcgaggtgttcccaaggtacttgttgttgtcacagatggtcggtctcag
gatgaggtgaggaaagcagcgacagtcatccagcactctggcttcagtgtcttcgtggtt
ggtgtggctgatgtagattacaatgaactggccaagattgccagcaagcccagtgagcgc
catgtatttattgttgatgactttgatgcctttgaaaagattcaagataacctcgtcacc
tttgtgtgtgagacagctacctcaacttgtcctcttatttatttggagggatatacttca
cctggtttcaagatgctggaatcatacaatctaacagagaagcattttgcttctgtgcaa
ggagtttcactggaatcaggctctttcccaagctatgtagcatatagactccacaaaaac
gcctttgtcagccagccaatacgggagattcacccagagggattgccccaggcatacacc
atcatcctgttattccgtctcctgcctgaatcccccaacgagccttttgcaatttggcag
attactgacagagattacaaaccacaagttggagttgtgcttgatcctgccagcaaagtg
ctgtcattctttaacaaggatacaagaggagaggttcaaactgtaacttttgataatgat
gacataaagaaaatattttatggaagcttccataaggtccatattgttgtaacttcatca
aatgttaagatttacattgactgcagtgaaatactggaaaaaccaattaaggaggctggc
aatatcacaactgatggctatgaaatacttgggaaacttctgaaaggcgaccgaagatca
gcaacattagaaatccagaattttgacatcgtatgcagtccagtttggactagcagagac
agatgctgtgatctcccttctatgagagatgaagcaaagtgcccagctcttccaaatgct
tgtacctgtactcaagacagtgtgggacctccaggacctcctggaccagctggtggtcca
ggtgctaaaggtcccagaggtgaaaggggtttgactggatcatctgggcctcctggtcct
cgtggtgagacaggtcctccaggccctcaaggtcccccaggtccacagggtcccaatggg
ctgtcaatcccaggagaaccgggtcgtcaaggaatgaaaggggatgctggccagcctgga
ctcccagggagatcgggaacgccaggtttacctggtccacctggaccagtgggacctcca
ggagaaaggggtttcacagggaaagatggtcccacaggtcccagaggcccaccaggacca
gcgggtgctccgggagttccaggagttgctggcccaagtggaaaaccagggaaaccagga
gatcgtgggacaccaggtgcacctggaatgaagggagaaaaaggtgacagaggtgatatt
gcttctcaaaacatgatgcgagcagttgcaagacaagtttgtgaacaactgataaatggt
caaatgagccggttcaatcaaatgctgaatcaaatcccgaatgattattattcgaaccga
aaccagccaggaccaccgggtccacctggtcccccaggagctgctgggacaagaggggaa
cctggacctggaggaagaccaggattcccaggacctcctggggtccaaggaccacctggt
gaaagaggaatccctggagagaaaggtgaaagagggactggatcccaaggaccacgaggt
ttgccaggaccacctggtccacaaggagaatctagaactggtccaccagggtccacagga
tcacgaggaccaccagggccaccaggccgtcctgggaatgcgggtatccggggtccccca
gggccaccaggctattgtgattcatcccagtgtgctagcatcccttacaatggccaagga
ttcccagaaccatacgtgcctgaaagtggaccctatcagcctgaaggtgaaccctttata
gtacctatggagtcagaaaggagagaggacgagtatgaggactatggagttgaaatgcat
tcaccagaataccctgagcacatgcgctggaaaagatcactgtcgagaaaggcaaaaaca
aaaccgtaa
DBGET
integrated database retrieval system
