Onychostoma macrolepis: 131538641
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Entry
131538641 CDS
T09350
Symbol
col7a1l
Name
(RefSeq) collagen alpha-1(VII) chain isoform X1
Organism
omc
Onychostoma macrolepis
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
VWA
fn3
VWA_2
Kunitz_BPTI
DUF4992
Motif
Other DBs
NCBI-GeneID:
131538641
NCBI-ProteinID:
XP_058628583
LinkDB
All DBs
Position
04:complement(24877412..24942647)
Genome browser
AA seq
3003 aa
AA seq
DB search
MGYCGMWIFLLSLSLFYQSATAEAEVCRTAMPADIVFLVDDSWSVGPTSFQQIKEFIADI
IRAFQGSVVGQEGIRFGVTVYSDLPRMRIALTDYSTLEEVLRAVEEVPYEGGNSRTGLAL
EFLVESVFSPSIIRDNAPKIAVLITNGQSDDPVDSPAKAVPDSGISLFAVGVRNANQAEM
RKIVTEPHEEHLLLSPDFSFLENLLPKISRRICFTASEPPRPVKQKPPVVERIVGPKDLQ
VSELSYSSLRLTWSQATGDVTGYRLLITPVSPKGHLLPAQQRQIDLKGDISSTPVTGLSP
KTEYSLTLYAIYPGRIGESATITTETTVLPPVSNFRVIEEGLFSLRLGWTPSLGKVDKYK
IYVPRTDRPGLIYDQILSGVASSHVIDTLEEDKEYTVDVYAIYPEGPSETVSVTGKTLKL
VPVDKLLVQNATTDTVQARWSSVRGATGYRLTWSSSEGHIENVNLGDNFNFYMVQGLHAG
TEYTITINPIFVDIEGPVTSAKAKTLESSAVQTLRASAVSTSSAVTLWNAVPGATGYRLA
WGPTAEFIGRDRPRQLALNGSTTEYVLKNLVHDTEYVLSLYVLFGSVVGPGITATFRTSP
LGYVSNFKVTSYTSSSIDVEWSPIVGATEYKLTWSSEFVSPQSRYLDRSILQHSITGLQP
QTLYSVSIHALYSNTEGPEITLSQQTASLTDSELIETVREVKVVDIGANSFKLAWKKTPG
ITGYKITWTPFHGGEKKSEVVSSSATSFTITDLPASSAYKIQVSAVVRSKEGSPVMVTAR
TLDLPKVTGFNALNTTDNSTVLNWTSVTGASGYLLSWRHISEVDISSDLLSSGFTSYKIR
DLLYGRTYIFSIRPLYGEVEGPVTTITKRILGTPRLIPVQSPTPAPVSANTKINDLPLQT
TTRNARTPLVKAPSAPTTTQRLAVRPQITTGQTASALTRITTVNDQTTLSVKTPPPGPVC
GRVKADIVFLVDESWSIGTNNFGKLKDFLFRIVTYFPSIGPKGTQIAVVHYSDQPRIEFN
FNTHKDRNSVLRALREVRYGGGNTKTGRGISYVLREMFQESLGMRQEVPHVLVLLTDGRA
QDDVEPPSRIAHALGVSVLAIGIAHADIEELRTIASPTAYKNIFFASDFDDLPTIEREFI
SSICSEALQSEFKQHDESAQLDTPTDDPEALSKPEGPCPLSCKGQKGEKGDGFGHGGLRL
KQGPGHYDSFSLKVKGEKGERGLPGTDGIPGLPGRPGRTGPPGSPGQRGGPGIPGDMGPP
GNTGPKGQRGERGEPGYVMGGMEVLPGRKGEPGSSGPPGAPGVPGVSGPPGLPGLPGPPG
SSGLSVKGETGESGPKGPRGKPGPKGEKGEHGSNGLPGLPGPVGVDGIPGLPGQKGGKGE
EGIGIQGVQGPLGPKGEKGNTGLQGPKGEVGIQGVQGITGPRGKKGLKGDQGDKGERGEI
GPIGPPGVAGFPGAAGRKGDEGQRGSPGDPAKGILGPPGKKGARGDVGQVGPPGPQGIKG
DHGDKGEKGSPGFGIPGQPGPKGESGERGNVGLSGKPGPKGGDGSKGDKGEVGFPGNPGS
PGLRGKDGLSGPKGEIGLRGESGSPGEPGERGVKGPLGLPGRPGDPGDKGESGKLGLPGP
EGNKGDKGEPGRPGPPGDTQFTTSDNTILTRAIKGEPGEPGLPGLRGETGRPGPPGPEGK
PGPPGNSLPDSSKGRDGMDGLPGRPGSKGEPGQKGDPGPKGEKGDPGRAGITGMPGLPGT
PGKSGVDGKRGVAGKDGDQGPKGDEGTKGEKGEHGANGNEGQKGEPGSPGLPGPPIVLQD
GMSIEDIKKAFPIPMGPPGTAGPPGMKGEKGDMGLKGEKGDAGTPGRAVEMKDIEGLFDS
YGIKLSLLKALIDRLLQDGMEELLHEISTSRRVKGDRQETDSNVITEYTSSVKYSHPQES
LPDTDLTEEESDLEEGQMPEPSPKPVVEKEVGAILSNLSTIHKKANQSKTKDKLVDAEEE
KLVETNFSDVTSLKFFQTNTSSERLDSGKVEVSMETVFHSHEDTGKKTSGEKKKGRERGK
GKGNKGRQKRQRKRLEDQDNIEEEVEEASYDDEEYEYEDELPTEEPFPSREEEGEGEELK
YSATTAIYTQENEGERTSQITQSPEEITLTVHTTTASPLLSLKVTEQKPPETALISVLNT
TQTGEEVSLSHSSGLEEARSKVKRSAPSSEYMAYMPGTPGGQNRYKQGSKRSTSGAQGKK
KLNKKKQENKDPEPVTEMYREREREDEVYLENKERIVEEEKTTGAQWDVEEEDGVTETKE
YSSGDGDEETGSEEIEEEFELERERERQEMEKERMELEREREEELERQRELERETEMEQE
EKEERERQLQRQRMEWERQRKKMERERMGETDREDDMGPPISHCDYLKGPPGENGKPGPK
GEIGETGQKGEPGTGHRGPIGQAGPPGQKGEPGEPGPPGAQGIQGIRGNPGIPGSPGHRG
QPGDPGEPGRKGDSGRRGKNGSPGTPGSIGPLGQQGPPGPSGVKGEKGDRIPGEPGDRGI
TGLPGRRGAKGTLGANGPPGLIGPKGMTGMKGEKGDKGVPGHRGDKGSPLSMPGPRGYKG
LKGEPGERGLPGFDGDKGEKGEDGPPGAKGLKGEAGTKGGMGPFGARGPVGQKGDPGEPG
ANGEKGRNGEHGLDGEKGDKGDMGLQGRKGDQGEKGEPGLPGDTGIKGEKGFRGFPGRIG
SPGLDGEQGDSGDPGRPGIPGLNGLPGRKGEKGDGGLNGLDGAPGQKGEKGAAGFPGFTG
FKGSPGASGTNGALGRPGPVGPKGEVGPKGEKGRRGRGKACQRGPPGIPGLRGLDGEVGT
LGMKGEKGEPGLSEEEVKDLVTKEVVEKCGKEIHLMVNTNDPDDGSILKEERTTDSASPF
LLTHPKVWDEESEDETTTVHPAVSEAEPTLAYGNVTRASIERDGEQREKRRALKLHSGLA
ADLCLEPMSEGHCTEYVLLWYYYAVSGECRPFVYGGCGGNRNRFSSKQDCESQCNLGRRD
FGS
NT seq
9012 nt
NT seq
+upstream
nt +downstream
nt
atgggatattgcggcatgtggatcttcctcttgtccctgtctctcttctatcaaagcgcc
actgcagaggctgaagtatgtcgtacagccatgcctgctgatattgtgttcctggtggat
gattcctggtcagtaggtccgaccagcttccagcagatcaaagagttcatagcggacatc
atccgagccttccagggaagtgtggttggacaggaaggcattcgatttggagtgactgtc
tattctgacttgcccaggatgcgtatagctctgacggattattcgactctggaggaagtg
ctgagagccgtggaggaggtaccatatgagggaggcaacagccgtaccggcttggcattg
gaattccttgtcgagtctgtgttcagtccttctatcatcagagacaacgccccaaagatt
gctgttctgatcactaatggccaatcggatgatccggtggacagtccagctaaagctgta
ccagatagtgggatttccctgtttgctgtgggggtgaggaatgccaatcaggctgagatg
agaaaaatcgtcacagaaccccatgaggaacatctactgctcagcccagatttctccttc
ctggagaaccttctgcccaaaatctctcgtcgcatctgcttcactgcatcggaacctccc
cgacctgttaagcaaaagccacctgtggtggagaggatagtaggacctaaagatctgcaa
gtgagtgagctgagttacagctctctgcggctgacctggagtcaggccacaggagacgtt
acgggctacaggctgctcatcacccctgtgtctccaaagggccatctgctcccggcacag
cagagacagattgatctgaagggagatattagtagtactccagtaaccgggttgagtcct
aagactgagtactccctgactttatatgccatctatcccggacgcattggagaatctgcc
actattaccacagaaaccactgttctgcccccggtttcgaacttccgtgtgattgaagaa
ggactgttctctttacgcctgggatggacgccttcgcttggaaaagtggataaatataaa
atttatgttccaagaacggacagacccggcctcatttatgatcagatactgtcgggtgtc
gcctcctctcacgtgattgacactttagaggaggacaaagagtacacggtcgacgtctac
gccatctacccagagggccccagtgagactgtatctgtcaccgggaaaactttgaaactg
gtcccagttgataaactgctggtgcagaacgccacaacagacacagttcaggcccgctgg
tcgtctgtcagaggcgccacaggatacagactcacctggtcatcatcagagggacacata
gaaaacgtgaacctgggagacaactttaatttctacatggtgcagggcctgcatgctggc
acagagtacaccatcaccatcaaccccatctttgtggacattgaagggcctgttacctct
gccaaagctaagacattggaaagcagtgcagtacagaccctgagagcgtctgcggtgagc
actagcagcgctgttaccttgtggaacgctgtacctggagccacaggctacagattggcc
tggggccctactgcagagttcatagggagagatcggcccaggcagctggctctgaatggc
agcactactgagtatgttctgaagaatctggtccatgacaccgagtatgtgctttccctt
tatgttctctttggttctgtggttggtccgggcatcaccgctacattcaggacctcacct
ctcggatatgtctcaaattttaaagtgacgtcatataccagctcgtccatcgatgtggaa
tggagtcctattgtaggggccacagagtacaaactcacctggagttcagaatttgtgagt
cctcagagtcggtatcttgaccgcagcattttacagcacagcatcactggtcttcagcca
caaactctttattctgtcagcattcacgctctctacagcaacacagaaggaccagaaatc
actctctcacagcaaacagcctctttgacagactctgagctgattgagacggttcgggag
gtaaaagttgtggacattggtgccaactcattcaaactggcctggaagaaaacaccaggc
atcactgggtacaagatcacttggacccctttccatggtggagaaaaaaagagtgaggtt
gtatcttcttctgccacgtccttcaccatcactgatctgcctgccagctctgcatacaag
atccaggtttctgcagtggtcagaagcaaagagggaagtccggtaatggtgactgcccgc
acattggatctgcccaaggtgactggattcaatgctctgaacaccaccgacaacagcact
gtactaaactggaccagtgtaactggagcgtctggatacctgctgtcctggagacatata
tcagaggtggacatctcctctgatctgctgagctctggcttcacctcctataagatccga
gatctcctgtatggcagaacttacatattttccatcagaccactttatggggaagtggag
ggtccggtcacgaccatcactaaaaggatcttgggaactcctcgtctcattcctgtccag
agtcccacgccggcccctgtctctgctaataccaaaatcaatgacctgcccctccaaacc
acaaccagaaacgctcgcaccccattggtcaaagcccccagcgcacccactaccactcag
agactcgctgtgaggcctcagatcaccactggccaaacggcttcagcactgaccagaatt
accacagtaaatgaccaaaccaccctgtctgtcaagacacctccacctggaccagtgtgt
ggcagggtgaaggcagatatagtgtttctggtcgatgaatcctggagcattggaactaat
aactttggcaagctgaaagatttcctgtttagaatcgtcacctacttcccctctatagga
cctaaaggaacacagatagcagtagttcactacagtgatcagcccagaatcgagttcaac
tttaacactcacaaagaccgtaactccgttttgagagcactccgtgaagtccgctacgga
ggggggaacacaaaaacaggtcgtgggatcagctatgtccttagggagatgtttcaggag
tctttgggtatgagacaggaagtccctcacgtgttagtgttactgactgacgggagagca
caggatgacgtagagccaccatccaggatagcacatgctctgggtgtcagtgtgttggcc
atcggcattgctcatgcagatattgaggagctgaggaccattgcctctcccaccgcttac
aagaacatattctttgccagtgatttcgacgatcttccaaccatcgagagagagtttatc
agcagcatctgtagcgaggccttacaatcagagttcaaacaacacgatgagtctgctcaa
ctggacacacctacagatgacccagaagctctcagtaaaccagaagggccctgtcctctt
agttgcaagggtcagaaaggagagaagggtgatggatttggtcatggtggcctgcgactc
aagcaaggaccggggcattatgattcattctctttaaaggtcaaaggggaaaaaggtgaa
cggggtcttcccggaacggatggtattccgggtttaccaggacgaccgggtagaactgga
cctcctggttctcctggacaaaggggggggcctggaattccgggtgacatggggcctcct
ggtaatactggtcctaaaggacagagaggagagagaggtgaaccgggctatgttatggga
ggtatggaggttcttccaggacgtaaaggagaacctggatcctctggccctccaggtgct
ccaggggtcccaggggtatcaggtcctccaggactccctggtttgcctgggcctccgggc
tcttctggactctctgttaagggcgagactggagaatctggtcctaaaggcccacgtgga
aaaccaggtccgaaaggagaaaagggggagcatggaagtaatggtctgccaggtttacca
ggaccagtgggagtggatggaattccaggacttcctgggcagaagggggggaagggagag
gaaggtatcggaattcagggtgttcaaggtccacttgggccaaaaggagaaaagggtaat
acaggactacaaggcccaaagggcgaagtaggaatccaaggagtccagggaatcacaggc
cctcgggggaaaaagggtcttaaaggagatcaaggagacaagggtgaacgtggggaaatt
ggacctatcgggcctccaggagttgcaggcttccctggagctgctggacgaaagggtgac
gaggggcagcgcggctctcccggtgacccagctaaagggatactcggtcctccggggaaa
aagggtgccaggggggatgttggacaagttgggccaccaggaccacaaggaatcaaagga
gatcatggtgataaaggtgaaaagggcagtcctggatttggaatccccggtcagcctggt
cccaaaggagagagtggagaaagaggtaatgttggattatcagggaaacctgggcctaaa
ggcggcgatgggtccaaaggagataaaggggaggtgggcttcccaggaaaccctggttct
ccaggactaagaggtaaagatggtctttcaggaccgaaaggagagattggattgagggga
gaatctggttcaccaggagaacctggagagagaggtgttaaggggcctctcggtcttcca
ggacgacccggtgaccctggggataaaggcgagtctgggaaattagggttaccaggtcca
gagggaaacaaaggagacaaaggcgagccgggaaggccgggaccaccgggagacactcaa
ttcactacgtcagacaacaccattctcaccagggccattaagggagaacctggtgagccg
gggctcccaggactccgaggggagacaggacgtcctggaccacctggtcctgaaggtaaa
ccaggacctccaggaaattcactgcctgactctagtaaaggaagagatggcatggatggt
ttaccaggaaggcctggatctaagggtgaaccaggacagaaaggggacccaggaccaaaa
ggtgagaaaggagatcctggacgtgctgggattactggtatgcctggtttacctgggaca
cctggaaaatctggtgttgatgggaaacgtggagtggctggaaaagatggagatcaagga
ccaaagggtgatgaagggacaaagggtgaaaaaggtgaacatggtgcaaatggaaatgaa
ggtcaaaaaggagaaccaggatctccaggcttgccaggtcctcccattgtcctccaagat
ggtatgtcgattgaggacattaaaaaggcatttcccataccaatgggacccccgggtacg
gcgggtcctcctgggatgaagggagagaaaggagacatgggtttgaaaggagagaagggt
gatgctggcacaccggggagagctgttgaaatgaaggacattgaaggcttgtttgattca
tatggtattaaactctcgctgctgaaggccttgattgacaggctgcttcaggatggaatg
gaggagcttcttcatgagatcagcaccagcagaagagtgaaaggagacagacaggagacg
gactcaaacgtcatcactgaatacaccagctcagtaaagtacagtcacccacaagagtca
ttacctgatacagatttaactgaggaagagtctgatcttgaagaagggcagatgcctgag
cccagtcctaagcctgttgtagaaaaagaagtgggtgctatcctttcgaacctctctact
attcacaaaaaggccaaccagagtaaaaccaaagacaagctggtagatgctgaagaagag
aaacttgtggagaccaactttagtgatgtaacatctttgaaatttttccaaaccaacact
tcctctgagaggttggactctgggaaggtagaggtaagtatggagacagttttccacagc
catgaggacacagggaagaaaacatcaggagagaagaagaaaggcagagagaggggaaag
ggcaaaggaaataaaggacgtcaaaaacgacaaaggaaacgtttggaggatcaagacaac
attgaagaggaggttgaggaagcatcatatgacgatgaggaatatgaatatgaggacgag
ctgcccacagaagagccttttccctctcgagaggaggagggcgaaggggaggagctaaaa
tactcagcaacaacagctatatacacacaagaaaatgagggtgaaagaacttctcagatt
acacagtctccagaggagattacactgacggttcacactacaacagcgagtcccctgctt
tcattaaaagtcacagagcagaagccgcctgaaactgcattaatatcagtgctaaatacg
acacaaactggagaggaggtgagcttgtcccacagtagcggtctggaagaggcaagatct
aaagtgaagagaagtgctccttcatccgagtacatggcctacatgcctggaacaccagga
ggacaaaaccgttacaaacaaggatctaagcggtccacctcaggtgcacaaggcaaaaag
aagctaaataaaaagaagcaagaaaacaaagaccctgagcctgtgacagagatgtacagg
gaaagagagagagaagatgaagtctatcttgagaacaaagaaaggattgttgaagaggaa
aagacaactggggcacagtgggatgtggaggaagaggatggtgtgactgagaccaaggaa
tacagttcaggtgatggtgacgaggagacaggcagcgaggagatagaggaggaatttgag
ctagagagggagagagagagacaggagatggaaaaagaaaggatggaactggaacgagaa
agagaagaagaactggaaaggcagagagagctagagcgggagacagagatggagcaagag
gaaaaggaggagagagagagacagttacagagacaacgaatggaatgggaaagacaaaga
aagaagatggagagagagaggatgggagagacagaccgagaagacgacatggggccccct
atttcccactgtgattaccttaaaggacctccaggtgaaaatggaaaaccaggccctaag
ggggagattggtgaaacaggccagaagggagaacctggaactggtcaccgtgggcccata
ggtcaggccggtccaccaggacaaaagggtgagcctggagaaccaggaccacctggagca
cagggcattcagggaatccgtggcaaccctggcatcccagggtcaccaggtcacagaggt
cagccaggtgaccctggagaaccaggtagaaagggtgatagtgggagacgagggaagaat
ggctcacctggtactccaggttcaatcggtcctctgggacagcagggtcctcctggcccc
tctggggtcaagggtgaaaagggagaccgtatcccaggagaaccaggtgacagaggaatt
actgggctcccaggtcgcaggggagccaaaggcactctcggtgccaacgggcctccaggt
ctcataggtcctaaaggcatgacaggtatgaaaggagaaaagggtgacaaaggtgtgcct
ggtcacagaggagacaagggtagtcctctttccatgccaggacccagaggatataagggt
ctgaaaggagagccgggtgaacgtgggcttccaggatttgatggagataaaggggagaag
ggtgaagatggtccacctggtgcaaaggggctgaagggagaggctggtactaaaggaggc
atggggccttttggtgcacgtggtccagtgggacaaaagggagatccaggggagccaggc
gccaatggggaaaagggtcgtaatggagaacatggattggatggtgagaaaggtgataag
ggagacatgggcctgcagggtcgaaagggagatcagggtgagaaaggagagcctggttta
cctggagatacaggaattaaaggcgagaagggcttcagaggtttccctggtcgaataggg
agtccaggactggatggagaacagggtgattctggggaccctggaaggcctggcattcca
ggactaaacggtcttccgggacgaaagggagaaaaaggtgatggtggtctgaacggtctt
gatggagctcctggacaaaaaggagagaagggcgcggctggtttcccaggtttcactggg
tttaagggatctcctggtgcatcaggaactaatggggctctgggtcggcctggtccggtt
ggacctaaaggtgaagtgggaccgaagggagagaagggaaggagaggcagaggaaaggcc
tgtcagcggggaccacctggaattcctggcctcagaggcctggatggggaagtgggaacc
ttaggcatgaaaggagaaaaaggggagccaggactcagtgaggaggaagtgaaggatctt
gtgacaaaggaggtggttgagaagtgtggaaaggaaatacacctgatggtgaacacgaat
gatccagatgatgggagtatcctaaaggaagagagaacaacagattctgcctctccattc
ttgctcacccatcccaaagtgtgggatgaagagtcagaggacgagaccactacagttcat
cctgctgtttcagaggctgagccaacattagcatatggcaacgttacaagagccagtatt
gagagagatggagagcagagagaaaagagacgtgcactcaaactccactcaggcctagcc
gctgatctgtgccttgaacccatgtctgagggccactgcaccgaatacgtcctgctctgg
tactactacgccgtctcaggagaatgccgtccctttgtgtatggtggctgtggaggaaat
aggaaccgcttcagctccaaacaggactgtgagagtcaatgtaatctggggaggagagat
tttggatcctaa
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integrated database retrieval system
