Onychostoma macrolepis: 131551991
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Entry
131551991 CDS
T09350
Symbol
prkn
Name
(RefSeq) E3 ubiquitin-protein ligase parkin isoform X1
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
omc
Onychostoma macrolepis
Pathway
omc04120
Ubiquitin mediated proteolysis
omc04137
Mitophagy - animal
omc04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
omc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
131551991 (prkn)
04120 Ubiquitin mediated proteolysis
131551991 (prkn)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
131551991 (prkn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
omc04131
]
131551991 (prkn)
04121 Ubiquitin system [BR:
omc04121
]
131551991 (prkn)
03029 Mitochondrial biogenesis [BR:
omc03029
]
131551991 (prkn)
Enzymes [BR:
omc01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
131551991 (prkn)
Membrane trafficking [BR:
omc04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
131551991 (prkn)
Aggrephagy
Other aggrephagy associated proteins
131551991 (prkn)
Xenophagy
Other xenophagy associated proteins
131551991 (prkn)
Ubiquitin system [BR:
omc04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
131551991 (prkn)
Mitochondrial biogenesis [BR:
omc03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
131551991 (prkn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
ubiquitin
IBR
Rad60-SLD
Rad60-SLD_2
Dsc3_N
Motif
Other DBs
NCBI-GeneID:
131551991
NCBI-ProteinID:
XP_058651282
LinkDB
All DBs
Position
13:6910834..7052314
Genome browser
AA seq
460 aa
AA seq
DB search
MIVYVRFNSSHGFPVELEQGASVSELKETVGRLQGVQPDRLRVIFAGQELCNESTLQGCD
LPEQSTVHVVLPLSTSSQRSELVQRHRPGGGMESLTRLDLSGSRLTSVSEGLAVILETDA
SRQGNFIGRTGTEQAKAHSSFYVFCKTVCKAIQPGKLRVRCRDCKQGTLTLSRGPCCWDD
VLLPNRIHGVCQSQDCDGTVAEFYLKCAAHPTCDNDTSASLDLIMPNTRRVPCIACTDIM
TPVLVFQCAERHVICLECFHLYCVTRLNERQFIQEPLVGYSLPCAAGCPDSLIKEVHHFR
VLGDEQYERYQQYAAEECVLQMGGVLCPAPGCGAGLLPVDEDRRVCCVLGNGLGCGFVFC
RDCKAEYHEGPCRQRTDTATGSALQGYIVDEEAALHARWEQASQETIDETTHPCPKCQVP
VEKNGGCMHMVCPRPQCKFEWCWLCRVEWNRECMGNHWFG
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgatcgtatatgtgcggtttaactccagccatggattcccggtggaactggaacagggt
gcgagtgtatctgagctgaaagagacggtgggacgtttacagggagtacagcctgatcga
ctgcgggtcatctttgctggacaagagctctgcaatgaatccacacttcagggctgcgat
ctccctgagcagagcacggttcatgtggttctgcccctgtccacctcgagccagcgctct
gagctggtccagcggcacaggccgggcggcgggatggagagcttgacccgactcgacctc
agtggctcccgtctgaccagtgtgtctgaaggcctggctgtcattctggagacagatgcg
tccagacaggggaacttcattggacgcacaggtacagagcaagctaaagcccacagcagt
ttctatgtgttctgtaagacggtctgcaaggccattcagcctggaaaactacgtgttcgc
tgcagagattgcaaacaaggcactcttactctcagcagggggccgtgctgctgggatgat
gtccttctccctaacaggattcatggagtatgtcagtcacaagactgtgatggtacagtt
gcggagttctacctgaaatgtgctgcccaccctacctgtgataatgacacttcagcatca
ctggacttgataatgcccaacacacgcagagtgccctgcattgcctgcactgacatcatg
actccagtgctggtgtttcagtgtgccgagcgtcatgtgatctgcctggagtgcttccac
ctgtactgtgtgaccagactcaatgagcgacagtttatccaggagccgctggtgggctac
tctctgccctgcgcagccggctgtcctgattcgcttattaaagaggttcatcatttccga
gtcttgggagatgagcagtatgagcgctaccagcaatacgcagcggaggagtgtgttctt
cagatgggaggagttctgtgtcccgctccaggatgtggtgcggggctgcttcctgtggat
gaagacaggagagtctgctgtgtgttggggaatggactcggctgtgggtttgtgttttgc
agggactgtaaggcagagtatcacgagggcccctgcagacagaggacagacacggcaaca
ggaagtgccctacagggttatattgtagatgaagaggcagcacttcatgctcgctgggaa
caggcctcacaggagactatagacgaaaccactcacccctgccccaaatgccaagttcct
gtggaaaaaaatggtggctgtatgcacatggtgtgtccgcgtccgcagtgtaagtttgaa
tggtgctggctctgtcgtgtggagtggaacagagaatgcatgggcaaccactggttcgga
tga
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