Oryzias melastigma (Indian medaka): 112136688
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Entry
112136688 CDS
T07439
Name
(RefSeq) tripartite motif-containing protein 16-like
KO
K12006
tripartite motif-containing protein 16
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oml04121
]
112136688
Ubiquitin system [BR:
oml04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
112136688
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRY
zf-C3HC4_4
zf-B_box
zf-RING_UBOX
SPRY
zf-C3HC4_2
zf-C3HC4
zf-C3HC4_3
zf-RING_2
zf-RING_10
zf-RING_5
Prok-RING_4
U-box
zf-RING_6
HpHbR
RSS_P20
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
112136688
NCBI-ProteinID:
XP_024114333
Ensembl:
ENSOMEG00000018304
LinkDB
All DBs
Position
LG16:complement(23507185..23509043)
Genome browser
AA seq
554 aa
AA seq
DB search
MAQKGADLDQETFSCSICLDLLKDPVTIPCGHSYCMKCIQGFWDGEEIIHSCPQCRKTFT
PKPVLVKNVMFAALVEQLKKTGLQAAPADHCFAGPEDVSCDVCSGRKLRAIKSCLICLAS
YCEKHLQPHLDAAALQKHKLVEPSKNLRENICSIHDEVMKMFCRTDQKCICYLCSVDEHR
GHDTVSAAAERTERQSDLEESQQQIQQRIQDREKEVRLLQQEVEAINHSADQTVKDSEEI
FTEMIRLIQDRSCDVKQQIRSQQQTEVSGVKDVQQQLEQEITELKRRDAELKQLSLTEDH
SQFLLTYPSLPPLRESTPSSSINVRPLRYFEDVTAAVSELRDKLQDILREEWTNISLTVT
NVDVLMPEPEPTSRSDFFKYSCPITLDPNTANRRLSQSEENKKVMFLEKPQSYSDRPNNF
TDYLQVLSRESLTGRRYWEVEWRGEYVYVAVAYKNISRSGDESGFGYNDKSWALYYSPHS
ISFYHNSIQTSISAPVSSRVGVYLDHRAGVLSFYSVSESMTLLHRVQTTFTQPLHAGLVL
GYAVEATAEFCKLE
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atggctcagaaaggagccgatctggatcaagaaaccttcagctgttccatctgtcttgat
ctcctgaaggatccggtgactattccctgtggacacagctactgcatgaagtgtattcaa
ggattctgggatggagaggagataatccacagctgtcctcagtgcaggaagaccttcaca
ccgaagcctgttctggtgaaaaatgtcatgtttgcagctttagtggagcagctgaagaag
accggactccaagctgctcctgctgatcactgctttgctggacctgaagatgtgtcctgt
gatgtctgctctggaagaaaactgagagccatcaagtcctgtttgatctgtctggcctct
tattgtgagaaacaccttcagcctcatttggatgcagctgcattacagaaacacaagctg
gtggaaccctccaagaacctgcgggagaacatctgctctattcatgatgaggtgatgaag
atgttctgtcgcactgatcagaagtgtatctgttacctgtgctctgtggatgaacatcga
ggccacgacacagtctcagctgcagcagaaaggactgagaggcagagcgatctggaggag
agtcaacaacaaatccagcagagaatccaggaccgagagaaggaggtaaggctgcttcaa
caggaggtggaggccatcaatcactctgctgatcaaaccgtgaaggacagtgaggagatc
ttcactgagatgatccgtctcatccaggatagaagctgtgatgtgaagcagcagatcaga
tcccagcagcaaactgaagtgagtggagtcaaagatgttcagcagcagctggagcaggag
atcactgagctgaagaggagagacgctgagctgaagcagctctcactcacagaggatcac
agccagtttctgctcacctacccctcactgccaccactcagagagtccacaccctcatcc
agcatcaacgtccgtcctctgagatactttgaggatgtgacagcagctgtgtccgagctc
agagacaaactgcaggacattctaagagaggaatggacaaacatctcactgacagtcact
aatgtggatgttttaatgccagaaccagagccaacaagcagatcggacttctttaaatat
tcatgtccaatcacactggatccaaatacagcaaacagacgtctgtcacagtcagaggag
aacaaaaaggtgatgtttttggaaaaacctcagtcttattctgatcgtccaaacaatttc
accgattatcttcaggttctgagtagagagagtctgactggacgtcgttactgggaggtg
gagtggagaggagaatatgtttatgtagcagtcgcatacaagaacatcagcagatctgga
gatgaaagtggatttggttataatgacaaatcttgggcattgtattattctccacacagc
atctcattttaccacaacagcattcaaacctccatctcagctcctgtttcctccagagta
ggagtgtacctggaccacagagcaggtgttctgtccttctacagcgtctctgaaagcatg
actctcctccacagagtccagaccacattcactcagccgctccatgctggactggtgttg
ggttatgctgttgaagccacagcagagttctgtaagctcgaatag
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