Oryzias melastigma (Indian medaka): 112142918
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Entry
112142918 CDS
T07439
Symbol
shprh
Name
(RefSeq) E3 ubiquitin-protein ligase SHPRH isoform X1
KO
K15710
E3 ubiquitin-protein ligase SHPRH [EC:5.6.2.-
2.3.2.27
]
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oml04121
]
112142918 (shprh)
Enzymes [BR:
oml01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112142918 (shprh)
Ubiquitin system [BR:
oml04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
112142918 (shprh)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SHPRH_helical-1st
SHPRH_helical-2nd
Linker_histone
Helicase_C
zf-RING_UBOX
zf-C3HC4
zf-RING_2
zf-C3HC4_2
zf-RING_5
PHD
TPR_10
SelB-wing_2
Motif
Other DBs
NCBI-GeneID:
112142918
NCBI-ProteinID:
XP_024122367
Ensembl:
ENSOMEG00000023747
LinkDB
All DBs
Position
LG22:255174..274194
Genome browser
AA seq
1621 aa
AA seq
DB search
MSSRRKRAPPARVDEEAKRRLAWDMLEDRRNEVQDQPTPSCSSGPPPSAAEAFCTPPLRV
SEERPGPSADGSSCSASLALSVLPASRLAPVWKAVIGEFRVQPARPPPDGEQRGFTLHRA
GGQLRLSYSAEEQTWSPGGDGCPAEAGLSRISLEELDWLQRRRVVQLLHQADAPAFKVGI
FLLESGLGKPEFLSEGNARLKKANQLLQKLMEYFYDFIIPEVVDNNEEECDTDLERQNVE
ELYDYVRHVHQRDSQQGAWDVQHKALIPVLRPYQSQAVNWMLRRERLRSGAPKDPSLHFL
WRELLTLCGKKLFYNPFTGCLIREFPLSGIEWPGGILADEMGLGKTVEVLALILSHSRQD
VQQEALTLPAGKSVNYFVPPPPLERKAASRCRSAVPPRARVSYPTVRAMLVTAIKEMRSG
KGASINAVFTYIRATYGYDLLKNRTHIKKTLAKLISEELVEQVKGRGLAGSFRLGKNHKE
TQKILAAATRSTCRPADATPRKPSQRRAKERAEAALHTALSEDPVSGCPVEEDGGGAPQE
EEGLLHAAPASTQASLDKAELQRERSVEEEPEERGGASEPEETPTRASLAPFNTPDYRFE
CICGELGVIDCKARVQCMNCQLWQHADCVNYKEESLATTPFYCPHCLVAMKPVSTGATLI
ISPSSICHQWVEEINRHIRSASLRVLVYQGVKKHGFIQPRVLAQQDVVITTYDVLRSELN
YVDIPHSNSQDGRRFRNQKRYMAVPSPLVAVEWWRVCLDEAQMVECPTAKAAEMALRLAS
VNRWCVSGTPVQRGLEDLYGLVLFLGVDPYWVKHWWDQLLYRPYRRGNTEPLYAVVAQIL
WRSAKKDVIDQIQIPPQTEEVHWLHFSPVEGHFYHRQHEVCSRDALLKLQKISDWSLKLG
SLDRRTVDSILYPLLRLRQACCHPQAVRGEFLPLQKSTMTMEELLKSLQKKCRVECEEAH
RQLVCALNGLAGIHIIRREFVEAAEMYREVLRSSEEHKDRLKTDSLQRLHATHNLMELLS
AKHSGIPPTLRDDRLSEEAEQLRQHYMTKYDHEVADAHQALQPVLQNIKELKRQVDLSSP
WWLDVIQKAIRFSTADDLVSRVKNELTSSYKQPANKLSMAEKFRDASGLQFLLSTQMQDL
MRSQQTVRDAVKSLEGPASREVIEEATVCHLRPMRLPLNNCVFCKADELFTDYESKLFAH
TVKGQTAIFEEMIEDEEGLMDDRLPTTSRGLWAASETERTLKAILSFAKSRRLDPELVEE
GNTFMELFENWKKEYKVLHEYWMVLRNHVSAIDELGMATERLRVRLPDEPKPKLLHIIEP
HEVEQNRVKLLNDQAVAKSQLQKKLGQFLYLTNLEKSQDKSTGGLNPEPCPICARPLGQE
WAVLTCGHCFCNECISIIVEQYSVGSRRRAIKCAICRQTTSHTEISYVFTTQASSQDQDV
PVKGSHSTKVEAVVRTLKRIQIRDPGAKCLVFSTWQNVLDIIAKALFDNNMEFSQINGIH
KFQENLSSFKYEDQINILLLPLHTGSNGLNIIEATHVLLVEPILNPAHELQAIGRVHRIG
QTKPTFVHRFLIKSTIEERMQAMLKTQEKSHSSAAMKHSEAAVLTVADLADLFTEDAESL
E
NT seq
4866 nt
NT seq
+upstream
nt +downstream
nt
atgagcagccgccggaagagggcccccccggcgagggtggatgaggaggccaagaggagg
ctggcctgggacatgctggaggaccgcaggaacgaggtccaggaccagcccaccccctcc
tgctccagcggccccccgcccagcgccgcggaggctttctgcacgccccccctccgggtt
tcagaagagcgccctggcccgtcggcggacggcagctcttgctccgcctccttggcgctc
tccgtcctgccggcctccaggctggcccctgtctggaaggctgtgatcggggagttcaga
gtgcagccggctcggcccccgcccgatggggagcagagggggttcactctgcaccgcgcg
ggggggcagctgcgcctcagctacagcgcggaggagcagacgtggagcccggggggggac
ggctgccccgcggaggccggcctcagcaggatctccctggaggagctggactggctgcag
aggaggcgcgtggtgcagctcctccaccaggcagacgcgccggcgttcaaggttgggatt
ttcctgctggaatccggactgggaaagccggagttcctcagtgaggggaacgctcgtctg
aaaaaggccaaccagctgctgcagaagctgatggagtatttctacgacttcatcatccca
gaggtggtggacaacaacgaggaggagtgcgacacggacctggagcggcagaacgtggag
gagctgtacgactacgtcagacacgtgcatcagagggacagccagcagggggcgtgggac
gtccagcacaaagctctgatcccggtgctgaggccctaccagagccaggccgtcaactgg
atgctgaggagagagcggctccggagcggcgctcccaaagatccgtcgctgcatttcctc
tggagggagctgctgactctgtgtgggaagaagctgttttacaacccgttcactggctgt
ttgatccgagagttcccgctgagcgggatcgagtggcccggcgggatcctggccgacgag
atggggctgggcaagacggtggaggttctggcgctcatcctgtcccacagcaggcaggac
gtgcagcaggaggccctcaccctgccggcggggaagtcggtgaattatttcgtccctccc
cctcctctggagaggaaggcggcttcgcgctgccgctccgccgtcccgcccagagccaga
gtgtcctaccccaccgtgcgcgccatgctggtcaccgccatcaaggagatgcgatccggc
aaaggcgcctccatcaacgccgtcttcacctacatccgcgccacctacggctacgacctc
ctgaagaaccgcacccacatcaagaagactctggccaagctgatcagcgaggagctggtg
gagcaggtcaaaggtcgcggcctggcgggctcgttccggctggggaagaaccacaaagaa
acccagaaaatcctggcggccgcgacccgatcgacgtgcagaccggcggacgccacgccc
aggaaaccctcgcagaggcgagccaaggagagggcggaggccgctctgcacaccgccctc
tctgaagatccagtgtctggctgtcctgtggaggaggacgggggcggggctcctcaagag
gaggaggggctgctccacgccgcgccggcctccacgcaggcgagtctggacaaggcggag
ctgcagagagagaggagtgtggaggaggagcctgaggagaggggaggagcctctgaaccg
gaggagacccccaccagagcgtcgctcgcccccttcaacacccccgactaccgcttcgag
tgcatctgcggcgagctgggcgtcatcgactgcaaggcgcgcgtgcaatgcatgaactgc
cagctgtggcagcacgccgactgcgtcaactacaaggaggagagcctcgccaccacgccg
ttctactgcccccactgcctggtggccatgaagcccgtctccaccggcgccacgctcatc
atctcgcccagctccatctgccatcagtgggtggaggagatcaaccgccacatcaggtcg
gcctcgctgcgcgtgctggtgtatcagggcgtgaagaagcacggcttcatccagccgcgc
gtgctggcccagcaggacgtggtcatcaccacctacgacgtgctgcgctccgagctcaac
tatgtggacatcccgcacagcaacagccaggacggacgccgcttccgcaaccagaagcgc
tacatggcggtgcccagccccctggtggccgtggagtggtggcgcgtctgcctggacgag
gcgcagatggtggagtgtcccacagcgaaggcggcagagatggctctgcgtctggcgtcg
gtcaaccgctggtgtgtgagcgggacgccggtccagagaggcctggaagatctctacggc
ctggtgctgttcctcggagtggacccgtactgggtcaagcactggtgggaccagctgctc
taccggccgtaccgccgcgggaacaccgagccgctctacgccgtcgtggctcagattctg
tggcgctcggccaagaaggacgtcatcgaccagatccagatccccccccagacggaggag
gtgcactggctgcacttctcccccgtggaggggcacttctaccaccgccagcacgaggtc
tgctcccgcgacgctctgctcaaactgcagaagatctccgactggagcctgaagctgggc
agcctggaccgccgcaccgtggacagcatcctgtacccgctgctgaggctgcggcaggcc
tgctgccacccccaggctgtgaggggggagttcctgcccctgcagaaaagcaccatgacg
atggaggagctcctgaagtccctgcagaagaagtgtcgggtggagtgtgaggaggcgcac
cgccagctggtgtgcgctctgaacggcctggccggcatccacatcatcagacgggagttt
gtggaggcggcagagatgtacagggaggtgctgcgctcctccgaggagcacaaggaccgg
ctgaagacggactcgctgcagaggctccacgccacccacaacctgatggagctgctgagc
gcaaagcattctgggattcccccgacgctgagggacgaccggctgagcgaagaggcggag
cagctgcggcagcactacatgaccaaatacgaccacgaggtggccgacgcccaccaggcc
ctgcagccggtgctgcagaacatcaaggagctgaagcggcaggtcgacctgagctctccg
tggtggctggatgtgatccagaaggccatccgcttctccacggccgacgacctggtgtcc
cgggtcaagaacgagctgacgtccagctacaagcagccggccaacaagctgtccatggca
gaaaagtttcgtgacgcctctggtctgcagtttctgctcagcactcaaatgcaggacctg
atgcggtctcagcagacggttcgggatgcggtgaaaagcctggaggggccggcctccaga
gaggtcatcgaggaggccaccgtctgccacctcaggcccatgcggctccctctcaacaac
tgcgtgttttgcaaagcagacgagctgttcacggattacgagtccaagctgttcgctcac
accgtgaaaggccagacggccatctttgaggaaatgattgaggacgaagaggggctgatg
gacgaccgcctccccaccaccagccgcggcctgtgggccgccagcgagacggagcgcacg
ctgaaggccatcctgtcattcgccaaaagcagacgcctggacccggagctggtggaggag
ggaaacaccttcatggagctgtttgagaactggaagaaggagtacaaggttctgcacgag
tactggatggtgctgcggaatcacgtgtcggccatcgacgagctgggcatggccacggag
aggctgcgcgtccgtctgccggacgagcccaagcccaagctgctgcacatcatcgaaccg
cacgaggtggagcagaaccgagtcaagcttctgaacgaccaggcggtggccaagtctcag
ctgcagaagaagctgggacagtttctgtacctcactaacctggagaagtcccaggacaag
tccaccggcgggctgaacccagaaccgtgtcccatctgtgcccggcctctgggccaggag
tgggcggtgctgacctgcggccactgcttctgtaacgagtgcatctccatcatcgtggag
cagtacagcgtgggctcgcggcgccgagccatcaagtgcgccatctgcaggcagaccacg
tcccacacagagatctcctacgtcttcaccacgcaggccagcagccaggaccaagacgtc
cccgtgaagggaagccattccaccaaggtggaggccgtggtgaggacgctgaagaggatc
cagatccgggatcccggggccaagtgtctggtcttctccacgtggcagaacgttctggac
atcatcgccaaggccttgtttgacaacaacatggagttctcccaaatcaacgggatccac
aaattccaggagaacctcagctccttcaagtacgaggaccagatcaacatcctcctcctc
cccctccacacgggctccaacgggctgaacatcatcgaggccacccacgtcctgctggtg
gagcccatcctcaaccccgcccacgagctgcaggccatcggcagagtgcaccgcatcgga
cagaccaagccgacgtttgttcacagattcctcatcaagtccaccatagaggagcggatg
caggccatgctgaagacgcaggagaagagtcacagcagcgcagccatgaagcactcggag
gccgccgtcctgaccgtggcggacctggcggacctgttcaccgaggacgccgagtctctg
gagtga
DBGET
integrated database retrieval system
