Oryzias melastigma (Indian medaka): 112144291
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Entry
112144291 CDS
T07439
Name
(RefSeq) tripartite motif-containing protein 16
KO
K12006
tripartite motif-containing protein 16
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oml04121
]
112144291
Ubiquitin system [BR:
oml04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
112144291
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRY
zf-C3HC4_4
zf-RING_UBOX
zf-B_box
zf-C3HC4_2
zf-C3HC4
SPRY
zf-C3HC4_3
zf-RING_2
zf-RING_5
U-box
Prok-RING_4
zf-RING_10
zf-RING_6
LRIM1_dimer
Gp58
ToxN_toxin
AceK_regulatory
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
112144291
NCBI-ProteinID:
XP_024124542
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Position
LG17:15057837..15059609
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AA seq
557 aa
AA seq
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MAQKGVDLDQETFSCSICLDLLKDPVTIPCGHSYCMKCIQGFWDEEEKIHSCPQCRKTFT
PRPVLVKNTMLAALVEQLKKTGLQAAPADHCYAGPEDVSCDVCSGRKLKAIKSCLICLAS
YCEKHLQPHLDEAAFKKHKLVEPSKNLQENICSIHDEVMKMFCRTDQKCICYLCSVDEHR
GHDTVSAAAERTERQRDLEESQQQIQQRIQDRENEVKLLQQELQAINHSADQTVKNSEKI
FTQMIRLIKKRSCDVKQQIRSQQQTEVSRVKDLQEELEQEITELKRRDAELKQLSLTEDH
SQFLLNYPSLPPLSESTPSSSINVRPLRYFEDVRAAVSELRDELQDILSEEWTNISVTVT
LGDVLLPEPEPKSEPKSRADLLKFSCQITLDPNTAHKELLLSENRKVKLMKQPQSYSDHP
DRFTDYFQVLSRESLTGRCYWEVDWRGDNVFLAVAYKKIRRSGHKSKFGLNDKSWALYCS
PDFSFSFYYNNKRTSISAPGSSRIGVYLDHRAGVLSFYSVSKSMTLLHRVQTTFTRPLHA
GVRLCWFRDSAEFCKLK
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagaaaggagtcgatttggatcaagaaaccttcagctgttccatctgtctggat
ctgctgaaggatccggtgactattccctgtggacacagctactgcatgaagtgtattcaa
ggattctgggatgaagaggagaaaatccacagctgtcctcagtgcaggaagaccttcaca
ccgaggcctgttctggtgaaaaacaccatgttagcagctttagtggagcagctgaagaag
actggactccaagctgctcctgctgatcactgctatgctggacctgaagatgtgtcctgt
gatgtctgctctggaagaaaactgaaagccatcaagtcctgtttgatctgtctggcctct
tactgtgagaaacaccttcaacctcatttggatgaagctgcattcaagaaacacaagctg
gtggaaccctccaagaacctgcaggagaacatctgctccattcatgatgaggtgatgaag
atgttctgtcgtactgatcagaagtgtatctgttatctctgctctgtggatgaacataga
ggacacgacacagtctcagctgcagcagaaaggactgagaggcagagagatctggaggag
agtcaacaacaaatccagcagagaatccaggacagagagaatgaggtgaagctgcttcaa
caggagttgcaggccatcaatcactctgctgatcaaacagtgaagaacagtgagaagatc
ttcactcagatgatccgtctcatcaagaaaagaagctgtgatgtgaagcagcagatcaga
tcccagcagcaaactgaagtgagtcgagtcaaagatcttcaggaggagctggagcaggag
atcactgagctgaagaggagagacgctgagctgaagcagctctcactcacagaggatcac
agccagtttctgctcaactacccctcactgccaccactcagtgagtccacaccctcatcc
agcatcaatgtccgtcctctgagatactttgaggatgtgagagcagctgtgtcagagctc
agagacgaactgcaggacattctgagtgaggaatggacaaacatctcagtgacagtcact
cttggggatgttttactgccagaaccagaaccaaaatcagaaccaaagagcagagctgac
ctcttaaaattttcatgtcaaatcacactggatccaaacacagcacacaaagaactgtta
ctgtcagagaacagaaaggtgaaattgatgaaacaacctcagtcttattctgatcatcca
gacagatttactgattattttcaggttctgagtagagagagtctgactggacgttgttac
tgggaggtagattggagaggagacaatgtttttctagcggtcgcatacaagaaaatccgt
agatctggacataaaagtaaatttggtttaaatgacaaatcttgggcattgtattgttct
ccagacttcagtttttcattttactacaacaacaaaagaacctccatctcagctcctggt
tcctccagaataggagtgtacctggatcacagagcaggtgttctgtccttctacagcgtc
tctaaaagcatgactctcctccacagagtccagaccacattcactcggccgctccatgct
ggagtgaggttgtgttggtttagagactcagcagagttctgtaaactcaaatag
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