Oryzias melastigma (Indian medaka): 112145172
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Entry
112145172 CDS
T07439
Symbol
usp4
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 4
KO
K11835
ubiquitin carboxyl-terminal hydrolase 4/11 [EC:
3.4.19.12
]
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
oml01002
]
112145172 (usp4)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oml04121
]
112145172 (usp4)
Enzymes [BR:
oml01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
112145172 (usp4)
Peptidases and inhibitors [BR:
oml01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
112145172 (usp4)
Ubiquitin system [BR:
oml04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
112145172 (usp4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
Ubiquitin_3
DUSP
UCH_1
USP7_C2
USP7_ICP0_bdg
Choline_bind_1
Motif
Other DBs
NCBI-GeneID:
112145172
NCBI-ProteinID:
XP_024126034
Ensembl:
ENSOMEG00000010935
LinkDB
All DBs
Position
LG5:complement(31994676..32009896)
Genome browser
AA seq
998 aa
AA seq
DB search
MMAEGGGPESGSAADSNSEPVTAQMPTPSSESQKQTIGSLLKTPLKKGDEWYLIDSRWFK
QWKKYVGFDSWDMYNVGERSLYPGPIDNSGLFSDQETQALKEHLIDELDYVLVPTEAWDK
LVSWYGCLEGQRPIVRKVVEHGMFVKHCKVEVYLLELNLCENDNLDNIVTRHFSKADTID
TIEKEMRTLFNIPSEKETRLWNKYMSNTYEQLNKPDSTVQDAGLFQGQVLVIERKNEDGT
WPRQASHPKSSTTPSRNFSTSPKLSSNSSMSISPTATNGDSSSSPGYTLNNSTSSSNRFG
NYNSYNSYNYRESQAQPGLCGLSNLGNTCFMNSALQCLSNAPPLTEYFLNDQYEAEINRE
NPLGMRGEIAEAYADLVKQMWLSRSSYVAPRTFKTQVGRFAPQFSGYQQQDSQELLAFLL
DGLHEDLNRVKKKPYLALRDAEGREDEIVAKEAWKNHRLRNDSVIVDIFHGLFKSTLVCP
ECSKVSVTFDPFCYLTLPLPMKKDRTMEVFLVRSDPQSKPTQYRAVVPKLGAVADLCSAL
SKLCGIPPENMVVADVYNHRFHKIYRRDDGLNQIMEKDDIFVYEVQEEDSERMNLPIYLR
ERQSKHAASSTSTLLFGQPLLITVPRHNLTEDVLYEKILERIGRYVKHPQSPNSESKASA
SATVSSCNQAPESSTSSCPGGCSSPLSDGASCSASSSNDSNHSGTGSKTNGVFDGEEEAM
DHQVSPEPENGLSEEEEEETSDLENGSKVQKAKLFTFSIVNFYGTANISSLPRDGNVLKL
NPHSTVAIDWDTESKKLFYDEQEAEAYEKHESMLQPQKKKTTVALRDCIELFTTMETLGE
HDPWYCPTCKKHQQATKKFDLWSLPRILVVHLKRFSYNRCWRDKLDTVVDFPIGDLNMSE
FVCDPKATPYVYDLIAVSNHYGGMGGGHYTAYAKNKMDGKWYYFDDSSVSSATEDQIVTK
AAYVLFYQRREDDAPSKAPPSASLGASQESADDHMDTN
NT seq
2997 nt
NT seq
+upstream
nt +downstream
nt
atgatggccgaaggaggcggacccgagtcgggtagcgccgcagactccaactcggagccg
gtgaccgcgcagatgccgaccccttcatccgagagccagaaacaaaccatcggatcactt
ctgaaaactcctctgaaaaagggcgacgagtggtatcttatagacagtcggtggttcaaa
cagtggaaaaagtatgtgggatttgacagctgggatatgtacaatgttggagaacgcagc
ctctatccaggaccaattgataactcggggctgttctcagaccaagagacccaagctctc
aaagagcacctcatagatgagctggactatgttctagtgcccactgaagcctgggacaag
ctcgtcagctggtatgggtgtctggaaggccaaagacccatcgtcaggaaggtggttgaa
cacggcatgtttgttaaacactgtaaagtggaagtctatctgctggagctcaacttgtgt
gagaatgacaacttggacaatatcgtaacacgccattttagcaaagcagatactatagac
actatagagaaggagatgcggacgttgtttaacatcccttcagagaaagagaccagactc
tggaacaaatacatgagcaacacctatgagcagctgaacaaaccggacagtaccgtacag
gacgctgggctctttcagggacaggtgcttgtgatcgagcgcaaaaatgaggacggcaca
tggcccagacaggcgtcgcaccccaaatccagcacaacgccatccagaaatttctctacc
tccccaaagctgtcttctaattcgtccatgagtatatcgccgaccgcaaccaacggagac
agcagctcgagtcctggatacacgctgaacaacagcacttcctctagcaacaggtttggt
aactacaactcgtataactcgtacaactacagagagtctcaagcacagcccggcctttgt
gggctcagtaatttagggaacacgtgcttcatgaactctgctctccagtgcctgagcaac
gctcctccactcacagagtacttcctgaacgaccagtacgaggcggagatcaaccgggag
aatccgctgggaatgcggggcgagatagccgaggcctacgcagacctggtgaagcagatg
tggctgagccgcagcagctatgtggcaccacgtacgttcaaaacgcaggttggccgattc
gctccgcagttttcgggataccagcagcaagactcgcaagagttgctggcctttttgctg
gacggactccatgaagatctgaaccgcgtcaagaagaagccttacctcgccctaagagat
gcagagggtcgagaagatgagattgttgccaaggaagcctggaagaaccatcgcttgcgc
aacgactcggtaatagtcgacattttccacggcctcttcaaatccacgctggtgtgtccg
gagtgctccaaggtgtcggtcaccttcgaccccttctgctacctcacgttgcctctgcct
atgaagaaggaccgtaccatggaggtgttcctggttcggtccgatcctcagtctaaacct
actcagtatcgagcggtggttcccaaactgggcgctgtggcggacctttgcagtgccttg
tccaagctctgtggaatccctccagaaaatatggttgtggccgacgtttacaatcacagg
ttccacaaaatctacagacgagacgacggcctcaaccaaatcatggaaaaggacgacata
tttgtgtatgaggtgcaggaggaggacagtgaaaggatgaacttgcctatatacttgagg
gagcggcagtccaagcacgccgccagctccactagcaccttgttgttcggccagccttta
ctcatcactgtgcccagacataacctcaccgaggacgttttatatgagaagatactggag
aggatcgggcgctatgtaaagcatccccagagccccaatagtgaaagtaaggcctcggcc
tctgcgactgtgtccagctgcaaccaagctcccgaaagctccacgtcgtcttgtccgggt
gggtgcagcagccccctgtcggatggagcctcctgcagtgccagctccagcaacgacagc
aaccattcagggacgggcagcaaaaccaacggggtctttgacggtgaagaggaggccatg
gaccaccaggtgagtcccgaaccggagaacgggctgtccgaagaagaagaggaggaaacg
tccgacttggaaaacggctccaaagtccagaaggccaaactcttcactttcagcatagtt
aacttttacggaacggccaacatcagctcgctgcctcgtgacggaaatgtcctcaaactc
aaccctcattccaccgtcgccatcgactgggacacggagtcgaagaagctgttctacgac
gagcaggaagcagaggcctatgagaagcacgagagcatgctgcagcctcagaagaagaaa
accaccgtggctttgagggattgtattgaactcttcaccaccatggagactcttggagaa
cacgacccctggtattgtccaacatgtaagaaacaccaacaagccacaaaaaagtttgac
ctgtggtctttgcctcgcattctggtggttcatctgaagcgtttttcctacaatcgctgt
tggagggacaagctggacacggtggtggactttcctatcggagatctaaacatgtcagag
tttgtttgtgacccaaaggcaaccccctacgtctatgacctcattgctgtgtccaaccac
tatggaggaatgggaggaggccactacaccgcctacgccaagaataaaatggacggaaag
tggtattactttgacgacagcagtgtctcctcagccaccgaggaccagattgtgactaaa
gcggcctacgtgctcttctatcagcgccgagaggacgacgctccctccaaagctccgcct
tcagcttcgttgggagcgtctcaggagtcggccgacgaccacatggacacaaactga
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