Oryzias melastigma (Indian medaka): 112146143 Help Entry 112146143         CDS       T07439                                  Symbol col5a3a Name (RefSeq) collagen, type V, alpha 3a   KO K19721   collagen type V/XI/XXIV/XXVII, alpha Organism oml  Oryzias melastigma (Indian medaka) Pathway oml04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:oml00001]  09140 Cellular Processes   09142 Cell motility    04820 Cytoskeleton in muscle cells     112146143 (col5a3a)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:oml00536]     112146143 (col5a3a) Glycosaminoglycan binding proteins [BR:oml00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    112146143 (col5a3a) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI Laminin_G_2 Laminin_G_3 Pns11_12 TAF1D Motif Other DBs NCBI-GeneID:  112146143 NCBI-ProteinID:  XP_024127595 Ensembl:  ENSOMEG00000023938 LinkDB All DBs Position LG8:complement(9171372..9212704) Genome browser AA seq 1863 aa AA seqDB search MDHQTRTTSCWTILFLFILRPLATSQTADPIDVLRALELSENMEGVSLEAGLCTSRRGTD ETDMAYNIKKIQLSAPTKQLFPDSRFPENFSLMTTVRAKKGSQVFVLSVYNDEGVQQLGL EVGRSPVFLYEDQHGQPSPDLYPIFKRISLADGKWHRIAYSVLDKTVTLHLDCERVESVD LPRGDGAVVSTDGVTVFGTRLLDEEVFEGDIQQLLIVEDPHAAANYCVNYMPDCDSALPT VSQVSKRAENVRLEPDALMQSDHPAELKEVSERDRKGKKHKKKRGKGSKRKGKGKGKGKG KGKKGSRKRKHKEEDLSATVPEFQSQEAFQPTQLPEIKTVEINLPTEAFDQTITEVSINK PDFTTQAPTVVPSTVPVTEVTEEENTLLKEPVVEYGDDLYKDLYDDLSVSTVTVSPNGTE YEQIIEYEDFRNDTELEYEEYEIFEDDFDFAERERAETLNVEAALRAEKGQKGEQAVIEP GTLMVGPPGLLGPDGMPGPAGPVGPAGPRGEPGDMGPPGRPGLAGVDGIPGPPGTLLMIP FRYSAGDSQNGPVVSPQEAQAQAILQQSRLSLKGPPGPLGLTGRPGPLGVPGPSGLKGDR GNDGPPGPRGLPGTPGIHGKPGKRGHAGVDGGRGAPGEAGSKGDRGFDGLPGLPGDKGHR GDRGKPGPPGPAGEPGEKGPQGPLGSGGQPGEPGPRGLVGPRGPLGPPGQPGIRGIDGVQ GSKGNLGPPGEIGPPGQQGSPGVQGFPGAQGPIGLPGEKGPQGKPGILGLPGIDGPPGHP GREGPPGEKGLQGLPGSQGPIGYPGTRGVKGADGVRGLKGSKGEKGEDGFPGLKGEMGVK GDRGDNGAPGPRGEDGPEGPKGQTGSLGDPGAPGIAGEKGKLGVPGLPGYPGRQGAKGSL GFLGAPGVLGEKGRRGPPGQPGSGGQRGPNGARGGRGARGPTGKPGEKGSSGQDGPPGSP GEQGPQGPQGRNGETGPKGPNGPSGKDGLPGHPGQRGEPGFQGKNGLPGPPGVVGPQGKS GETGPTGDRGHPGSPGPPGEQGLPGTAGKEGAKGDPGPPGASGKNGPPGLKGFRGSRGTP GAVGPAGLKGGEGLPGVAGAAGATGERGPAGPAGAIGQPGRPGSVGPAGPMGEKGEPGEK GTTGLAGRDGEPGPAGLPGIAGPQGPPGEDGDKGETGGPGQKGSKGDKGESGPSGPVGIQ GPVGPPGPSGADGDPGPRGQQGLNGPKGDEGPRGFKGASGPSGLQGMPGPPGEKGESGHV GSMGPPGLHGPRGPQGPIGGEGQSGLPGGVGQPGLVGEKGEDGEAGDPGPVGEPGIPGAK GDVGEKGDAGPPGAAGPPGPRGAPGEDGPKGNLGPIGFPGDLGPPGEPGVNGADGTSGPK GDSGEPGKAGPTGASGEPGPPGPPGRRGHVGAAGKEGKQGMKGAKGGLGNLGPMGKPGPV GAQGHPGRPGPEGLRGIPGPAGEHGLSGPPGQIGPPGPIGPPGLPGFKGDPGLVGDKGHG GLIGLIGPPGEPGEKGDRGLPGIQGLRGLKGDEGVVGPHGPTGPPGPPGLSGAAGEKGSK GEPGVVGSIGDPGLAGPPGPPGPPATMIEPLPFREGRRKRRRQARRAASAKEDNVNKEER LQGDQPLEDAEGMEEVFATLSSMKNEVELMRRPTGTFESPARTCKELLMVQPHFRDGDYW IDPNQGCHKDSLRVFCNFTAGGETCLYPDKRIETVKLAAWNKEKPGSWYSQYRRGKQFSY SDRDGNPVHVVQLTFLKLLSATAKQTFTYNCQNSAGWFDSTSSSYQHALRFRGSNDEELT QAKSPFITAVHDGCQFRRSQERTVLEIAAPSAELLPIIDVAPEDFGKNTQKFGFQVGHVC FNG NT seq 5592 nt NT seq  +upstreamnt  +downstreamnt atggaccaccaaacaaggaccacgtcttgctggacaatactttttctattcatcctacgt cctttagcgacgagtcaaactgctgatcccattgatgttctgcgagcgctggagctttca gagaacatggagggggtgtccttggaggccggcctctgcaccagcaggaggggcactgat gagacggacatggcttacaacatcaaaaagatccagctcagcgcacccactaaacagcta ttccccgattccagatttcctgagaatttctctctgatgacgaccgttcgagctaaaaag ggctcccaagtttttgtgctttcggtgtacaatgacgagggggtgcagcagctggggcta gaagtggggcggtcgcctgtgttcttgtatgaggaccagcatgggcagccaagtccagat ttataccccatcttcaagaggatcagcctggctgatggaaaatggcacaggatagcctac agtgtgttggacaagactgtgacccttcaccttgattgtgaaagggtagagtctgtggat ctgccgcgaggggacggcgctgtcgtcagcactgatggagtgactgtgtttggaacgcgg ctgctggatgaagaggtttttgagggagacattcaacaacttctcattgtggaggacccc catgctgctgccaactactgtgtgaactatatgccagactgtgactctgctttgccaacc gtcagccaagtttcgaaacgggctgagaatgtccggcttgagcctgatgccttgatgcaa agtgaccacccagctgaactcaaggaggtgtctgaaagggacaggaagggcaaaaagcac aaaaagaaaaggggcaagggttccaaacgcaaaggcaagggcaagggcaaaggcaaaggc aaaggcaagaaggggtccagaaagagaaaacacaaagaggaggacttgtctgcaacagtg ccggagtttcaatctcaagaagcttttcagcccacgcagcttccagaaattaagaccgtt gagatcaaccttcccactgaagcttttgaccagaccatcactgaggtgtccataaacaag cccgatttcacaactcaggcccccactgtggtgcccagcacagtgcctgtcacagaggtt actgaggaggaaaacacactgctaaaggagccggtggtggagtatggagatgacctttac aaagacctgtatgacgatctctcagtttccacagtaaccgtgagcccaaatgggactgaa tatgagcagatcattgaatacgaagatttcagaaacgacactgagttagagtatgaagag tatgaaatattcgaggatgactttgactttgcagagcgtgaaagagctgagactctgaac gtagaggcagctctcagagcagagaaagggcaaaaaggagaacaagctgttattgaaccg ggaactctgatggtgggacccccgggcctgctggggccagatggtatgcctggcccagct ggacctgtaggccctgcaggacccagaggagagccaggtgatatgggccctccaggacgt cctggccttgctggagttgatgggatcccaggacctccgggaaccctgttgatgatacct tttcggtattcagcaggagattcacagaatggaccagtggtgtctccccaagaagcacaa gcacaagctattctgcagcagagcaggctgtcacttaagggacctccaggtccgctgggt cttacagggcgaccaggcccattgggtgttccaggcccatcagggctcaaaggtgataga ggaaacgacggtccccctggacctcgtgggttaccaggcacccctggaattcatgggaag ccagggaagaggggacatgcaggtgtggatgggggccgtggagctccgggggaagctggc tctaaaggtgacaggggatttgatggcctgcccggtctcccaggagacaagggacacaga ggggacagaggaaagcctggtcctccagggcctgctggagagccaggagagaaaggacct caaggacctctgggatcaggagggcaaccaggcgaacctggccctagaggtcttgttgga ccaaggggtcccctcggccctcctgggcaaccgggaatacgtggaattgatggagtacaa gggtcaaagggcaacctgggtccacctggagaaatagggcctccaggtcaacaaggcagt cctggagtgcagggctttcctggtgcccagggtccaatcggattgcctggggagaagggt ccacaggggaaaccaggtatactgggactgccaggcattgatggccctcctggacaccca ggaagagaaggacccccaggagaaaaaggtttacaaggtttaccaggctcgcagggccct atcgggtacccaggcactcgtggagtcaagggagcagatggagtcaggggtctgaaaggg agtaaaggagagaagggagaagatggtttcccagggcttaagggagagatgggcgtcaag ggagacaggggcgataatggagctcctggtccacgtggagaagatggacctgaggggcca aagggtcaaacaggatctttgggagatccaggggctcctggaattgctggagagaagggt aaacttggggttcctggcttgccaggatatccaggaagacaaggcgctaagggatcactg ggtttcctgggggcacccggggtcctaggagaaaagggacgaaggggtccacctggtcag ccaggttctgggggccaaagaggtcctaatggagctcgtgggggaagaggtgcaagggga cctactggaaagcccggtgaaaaggggtcatctggccaagatggtcccccaggatcaccc ggagaacagggtcctcaaggaccgcagggaagaaatggtgaaacaggacccaaagggcca aatggcccctcaggaaaagatggattgcctggtcatccgggtcagagaggagaaccaggg tttcaaggcaaaaatggacttccaggccccccaggagttgttggaccacaaggaaaatct ggtgagacagggccaactggagacagagggcatccaggttccccgggtccaccaggtgag caaggtttaccaggaactgctggaaaggagggtgccaagggggatccaggcccaccagga gcctcaggcaaaaatggccctccaggacttaaaggcttcagagggagtagagggacccct ggagcagtgggtcctgcaggtctgaagggaggggagggtctgcctggtgttgcaggagct gctggggccacaggagaaagaggccctgctggtcctgctggcgctattggccagccagga cggcctggcagcgtgggtcctgctgggccgatgggagagaaaggcgagccaggagagaaa ggaacaactgggctggctggacgtgatggggagccaggacctgcaggactgccagggatt gctgggcctcaagggcctccaggcgaggatggagacaagggagagacaggaggaccgggc caaaagggtagcaaaggagacaaaggagaatctgggccttctggacctgttggcattcaa ggacctgtgggtccaccaggcccatctggtgcagatggagatccaggtcctcgagggcaa cagggtctgaatggaccaaagggagatgaaggaccacggggttttaagggggcatccggt ccctctgggctacagggaatgccaggaccaccaggggagaaaggagagagtgggcatgtt ggctcaatgggacctccaggactgcatggtccacgtggcccccagggacccattggtgga gagggccagtctggattaccgggaggagttggtcaacctggacttgttggagagaagggc gaagatggagaagcaggagaccctgggccagttggagagcctggaattcctggtgccaaa ggcgatgtgggcgagaaaggtgacgctggacctcccggtgccgctgggcctcctggaccc agaggagcaccaggggaagatggacccaaaggcaatcttggacctattggctttcctgga gatttaggtccacctggagaaccaggcgtcaatggagctgatggtacttctggtccgaag ggagatagtggagaaccgggcaaagcgggacccacaggagcctccggtgaacctggtcca cctggacctcctggtcggagaggtcatgttggagctgcaggaaaagaggggaagcaaggc atgaaaggagccaaaggtggattgggaaacctgggtccaatgggaaaaccaggaccagta ggagcccaaggtcatccggggagacctggtccagagggtctcagagggatccctggtcct gcgggggaacatgggttaagtggaccaccaggacagattggaccacctggaccaatagga ccaccaggacttccaggattcaaaggagaccctggacttgtaggagacaaaggccacggg gggttgattggcctaattgggcccccaggagaacctggtgaaaaaggggacagaggcctt ccaggaatccagggtttacgaggactcaaaggagatgagggtgtggttggaccacatggc cctactggcccaccaggaccacctggactctctggtgcagctggagagaaaggatcaaaa ggagagccaggtgtcgtgggttccataggagatccaggccttgctggtccccctggacct ccagggcctcctgcaacaatgatcgagccgcttccgtttagggaaggcaggcggaagaga cgaaggcaggctaggagagcagcatcagccaaagaagacaatgtgaacaaagaagagcga ctgcagggagatcagcctctggaagacgctgaaggaatggaagaagtcttcgccaccttg tcttctatgaagaatgaagtggagttgatgagaaggcctactggaacctttgagagtcct gcccggacctgcaaagaacttctgatggttcagcctcatttcagagatggagactactgg atagatcccaaccagggttgtcacaaagactccctcagggtcttctgtaacttcacagct gggggagagacttgtctttaccctgacaaaaggatcgaaacggtgaaactagcagcatgg aataaagagaaacctgggagctggtacagccaatacaggagaggcaaacagttttcctac agtgacagagatggaaaccctgtgcatgtagttcagttgaccttcttgaagctactaagt gctacagccaagcagactttcacctataactgtcagaactcagcgggttggtttgacagc acctccagctcctaccagcatgccctccgctttagaggcagcaacgatgaggagctgaca caggccaaaagcccctttatcacagcggtacacgacggatgccagttccggaggagtcag gaaagaaccgttttggagatcgctgctccctcggcagagttgctccccattatagacgtg gctccggaagactttggcaagaacacccaaaagtttggattccaagtcggacatgtatgc ttcaacggttag

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