Oryzias melastigma (Indian medaka): 112155524
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Entry
112155524 CDS
T07439
Symbol
bard1
Name
(RefSeq) BRCA1-associated RING domain protein 1 isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
112155524 (bard1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oml03019
]
112155524 (bard1)
04121 Ubiquitin system [BR:
oml04121
]
112155524 (bard1)
03036 Chromosome and associated proteins [BR:
oml03036
]
112155524 (bard1)
03400 DNA repair and recombination proteins [BR:
oml03400
]
112155524 (bard1)
Messenger RNA biogenesis [BR:
oml03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
112155524 (bard1)
Ubiquitin system [BR:
oml04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
112155524 (bard1)
Chromosome and associated proteins [BR:
oml03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
112155524 (bard1)
DNA repair and recombination proteins [BR:
oml03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
112155524 (bard1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank
zf-RING_6
Ank_2
Ank_5
Ank_3
Ank_4
BRCT_2
BRCT
zf-RING_5
zf-RING_10
zf-RING_UBOX
zf-C3HC4_3
Motif
Other DBs
NCBI-GeneID:
112155524
NCBI-ProteinID:
XP_024142967
Ensembl:
ENSOMEG00000001402
LinkDB
All DBs
Position
LG21:complement(16052459..16124291)
Genome browser
AA seq
804 aa
AA seq
DB search
MEDHVVEQTQDWKSTKEALASFRQLLLCSKCSNLMEEPVCLGMCEHMLCRSCAGPQAGDG
CAVCLSPAWVKDIQINRQLSSIIQLFCGLESLLNPTKPDSVDDTQTEGEAAVFKHKKNFK
IWFSPRSRKVRCKVEKPSDVPVPENSGETVSPQLDAPAAQAQDLSVFNFTSSSQDSSSSQ
RCNSKNQKKKKKQQRSSKRNANSSQSQVQRTSRTTREQTKQNIKKKRLEAINQQWGITDA
EHASSELEQQCDNMSRRSSKRVSFSSSAVTCEEPPAKALKGNTELGPTQSTAGENVAESC
SSPPRSQTQLALSMSGSVGKLKIACANEPSLDEDVVNQSNISTPDKCSKRVEKKNSVLES
TPRRPRSSTTPRRKSLVEISPTVNNPRSLATPRKEKSTKNGKQRDATGLTLPERLSKSPC
SPGSAGRPNSGSPAFMKRNYKGETPLHLASIKGDVEAVKELLDQGADPNQKDNAGWTPLH
EACNLGHLAVVEVLAARGALLNTPGYENDSPLHDAVRNGHSAIVKVLLQLGASQTVLNLH
GKRPADYAVSPEMLNIFQEASEGIQRANSHMSSSPSASLSVVSESAKGDQTVVLLASKLS
QREQHQLARLEELLEGRMSDTFSASVSHVVVPEGPIPTSSSTLLGLLAGCWVVNYSWVEA
CLQAGRRLPEAEHEAGEGPRRSRINRCSLLPPLFDGCFFFLLGSFKAPSKDELAKLLREG
GGQLLSRQPKPDSDVTQTLSAAAYHAVPGSDQALCTQYIIYDPEGSYKPAVVRRGKVWSA
PSTWVIDCITAFSLLPVPEPQIVG
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atggaagatcacgttgtcgagcagacgcaggactggaaaagtactaaagaggcacttgcc
agcttccggcagcttttgctttgttccaaatgttcaaatttaatggaagagcctgtgtgt
ctgggcatgtgtgagcatatgctgtgcaggtcctgtgccggccctcaagcaggggatggc
tgcgcggtgtgcctcagccctgcgtgggtgaaggacatccaaatcaacaggcagctcagc
agcattatacagctcttttgtggtttggagtccctgctcaatcccacaaaaccagactct
gttgatgacacccaaacagaaggggaggcagctgtttttaaacacaagaaaaactttaag
atctggtttagtcctcgtagtcgcaaagttcgctgcaaggtggaaaaaccgtccgacgtc
ccagtgcccgaaaactctggtgaaactgtttctccacagctggatgcccctgcagctcaa
gcccaagacctgtccgtttttaattttacatcatcttcacaagactcttcttcttctcaa
agatgcaacagtaaaaaccaaaagaagaagaagaagcagcagcggtcatcgaagagaaat
gctaacagcagtcaatcacaggtgcagagaaccagcagaaccacacgtgagcagaccaag
cagaacattaaaaagaagaggctggaggccataaaccagcagtggggaattacagatgca
gaacatgcatcctctgagctggagcagcaatgtgataacatgtcaagaaggtccagtaag
agggtttctttctcaagctctgctgtcacctgtgaagagcctccagccaaagcattaaaa
gggaatactgaactcggtcctacccaaagcacagcgggagagaatgttgcagagagctgc
agcagtccaccgaggtcccaaacccagcttgctctgagcatgtctggcagtgttggtaag
ctaaagatagcatgtgcaaatgagcccagccttgacgaagatgttgtaaatcagagcaac
atatctactcctgataaatgctccaaaagagtagaaaagaaaaacagcgttttggaaagc
actccaagaagaccacgatcctctaccaccccacgaagaaagtcactagttgagatctct
ccaactgtcaataatcctcgatctttagctacaccccggaaagagaagagcaccaaaaac
ggcaaacaaagagacgcgacagggctgactctaccagaaagactcagtaaatccccctgc
agcccgggatcagctggtcgaccaaattctggaagccctgcatttatgaagaggaactac
aagggagagaccccactgcatctggcatcaataaagggagatgtagaggctgtcaaggag
ctgctggaccagggagctgacccaaaccaaaaggataatgctgggtggacacccctacat
gaagcgtgtaacctgggtcacctggcagttgtggaggtgctggccgcaaggggagcactt
ctaaacacaccaggctatgaaaatgactctccactccacgatgccgtcaggaacggacac
tcggccatcgtcaaagtgctgctacagctcggagcctcacagaccgttcttaatctgcat
ggaaagcggcctgcagattatgcagtgagcccggagatgctgaacattttccaagaggcc
tctgaaggaatccagcgtgccaattctcatatgtcttccagcccatcagccagtctctct
gtggtgagtgaatctgcgaaaggtgatcaaactgtggtacttttggcttccaagctgtca
cagcgagagcagcaccagctggccagactggaagagctgctggaagggagaatgtctgac
accttctctgcctcagtaagccatgtcgtggtgccagaaggaccgatacccacaagctcc
tccaccctcctgggccttctggctggttgctgggttgtcaactacagctgggtggaagca
tgtctgcaggcggggaggcggctgcctgaagccgagcacgaagcaggagaaggtcctcgg
cgcagtcgcatcaacagatgcagcttgctccctccgctcttcgacggctgcttcttcttc
ctcctcggctcctttaaggcaccaagcaaagacgagctggccaagctgctgcgggaagga
ggaggccaactcctgagccggcagcccaagccggacagtgatgtgactcagactctgagc
gctgcagcgtaccatgcggttcctggttccgaccaggctctgtgcacccagtacatcatc
tatgacccagaaggctcttataaacctgcagtggtcaggcgggggaaggtgtggtctgct
ccctccacctgggtcatcgactgcatcacagcgttcagcctcctccctgttccagaacct
cagattgtgggataa
DBGET
integrated database retrieval system
