Oryzias melastigma (Indian medaka): 112158663
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Entry
112158663 CDS
T07439
Symbol
cacna1fb
Name
(RefSeq) calcium channel, voltage-dependent, L type, alpha 1F subunit
KO
K04853
voltage-dependent calcium channel L type alpha-1F
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04010
MAPK signaling pathway
oml04020
Calcium signaling pathway
oml04260
Cardiac muscle contraction
oml04261
Adrenergic signaling in cardiomyocytes
oml04270
Vascular smooth muscle contraction
oml04912
GnRH signaling pathway
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
112158663 (cacna1fb)
04020 Calcium signaling pathway
112158663 (cacna1fb)
09150 Organismal Systems
09152 Endocrine system
04912 GnRH signaling pathway
112158663 (cacna1fb)
09153 Circulatory system
04260 Cardiac muscle contraction
112158663 (cacna1fb)
04261 Adrenergic signaling in cardiomyocytes
112158663 (cacna1fb)
04270 Vascular smooth muscle contraction
112158663 (cacna1fb)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
oml04040
]
112158663 (cacna1fb)
Ion channels [BR:
oml04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
112158663 (cacna1fb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
CAC1F_C
Ca_chan_IQ
GPHH
PKD_channel
Motif
Other DBs
NCBI-GeneID:
112158663
NCBI-ProteinID:
XP_024147887
LinkDB
All DBs
Position
LG7:24803449..24848512
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AA seq
2047 aa
AA seq
DB search
MFEESHKRGGCNGYTNAVDGENDGGEGEEEEEGGDQGEEVDNEGGERDLEWDEELDGGNE
GGVRMTRTDTLHSTTSSTATQRRRGQHSKKQAQGNNQVQRAPRALYCLKLNNPIRRAALS
IVEWKPFDIFILLAIFANCVALGVSKPFPEDDSNSTNHDLEQVEYVFLIIFTVETFLKIL
AYGLVMHPSSYIRNGWNLLDFVIVIVGLFSVVLETMTHKSTGEQATTHHMPGKPGGLDVK
ALRAFRVLRPLRLVSGVPSLQIVLNSIMKAMVPLLHIALLVLFVIIIYAIIGLELFIGRM
HRTCYYTRTDNYVEDEPVPCAFAGHGRQCIINGSECRGGWDGPNGGITNFDNFFFAMLTV
FQCITMEGWTDVLYWMNDAIGFELPWVYFVSLVIFGSFFVLNLVLGVLSGEFSKEREKAK
ARGDFQKLREKQQMEEDLCGYMDWITQAEDMDDLDEDGNPRPSLGDLSDKKRGKFGWFSH
SNETHASLPASETASENTENIDEEHTNCCQACCARMMKIGCCRTLRRWNRVCRRNCRTAV
KSVTFYWLVLLLVFLNTSLSASEHYNQPEWLTQVQDIANKVLLSLFTVEMLLKMYSLGLA
HYFTAFFNRFDCFVVCGGIMETILVELEIMPPLGISVLRCVRLLRIFKVTRHWTALSNLV
ASLLNSMKSIASLLLLLFLFLIIFALLGMQLFGGKFNFDETQTKRSTFDAFPQALLTCFQ
ILTGEDWNVVMYDGIMAYGGPVFPGMIVCIYFVILFICGNYILLNVFLAIAVDKKKKEGA
EEAEEEEVKVDVDEDTEYEEEEELPEGDEDDGGVQLKMADLTPPKEKVLPIPEGSAFFCL
SKTNPIRVACHTLIHHHIFTNLILVFIILSSCSLAAEDPIRAHSFRNNILGYADYAFTSI
FTVEILLKMTVHGAFLHQGSFCRNWFNLLDLLVVSVSLVSFFLHSSAISVVKILRVLRVL
RPLRAINRAKGLKHVVQCVFVAIRTIGNIMIVTTLLQFMFACIGVQLFKGKFYRCTDEAK
STPEQCKGTFVVYKDGDVTHPMVRQRIWLNSDFNFDNVLMGMMALFTVSTFEGWPALLYK
AIDANGENSGPIYNYRVEISIFFIVYIIIIAFFMMNIFVGFVIITFREQGEQEYKNCELD
KNQRQCVEYALKAQPLKLYIPKNPVQYKFWSIINSTGFEYVMFVLILLNTVTLAVQHYEQ
SKTFSYIMDILNMVFTGLFTVEMLLKLLALRPRHYFVDPWNSFDALIVVGSVVDIVVTEF
SSGEDSSRVSITFFRLFRVMRLVKLLSKGEGIRTLLWTFIKSLQALPYVALLIAMIFFIY
AVIGMQTFGKIAMQDYTQINRNNNFQTFPQAVLLLFRCATGEAWQEIMLASLPGKRCDPE
SDYEPGEEFSCGSNFAIVYFISFFMLCAFLIINLFVAVIMDNFDYLTRDWSILGPHHLDE
FKRIWSEYDPEAKGRIKHLDVVALLRRIQPPLGFGKLCPHRVACKRLVAMNMPLNADGMV
TFNATLFALVRTALKIKTEGHPEQENEELRAIIKKIWKRMKPKLLDEVIPPHEEEEVTVG
KFYATFLIQDYFRKFRKRKEKGDLTGDPNSTNPSAVQLCKAGLKTLQDLGPEMRLALNED
LDEEEAMLEEEEMEDSASYMAENHFEAEKERRGSILTPTGLGGVLADSGSSNGCLVHRVG
SFTKMANGNEHGDHSRRKESLRSSFNQRHSLGKSSLLDHAHRRPSFYKNERKESRDRSWR
NGDVEAYGEQGYYSREEDSESITSRDRDHPIGNTACTNSSYGDGYSEGRRTTRRRLLPAT
PTGRKPSFNIQCLRRQGSSDDLPIPGTYHPTSPQRRSHAQVFNSYDSRRSSGHSTATSST
SWANPCPRRGRLLYAPLILVEEEGSPPWLGGGPGGEGKRGGAERTGVSTTSAVPRPAWYG
ATPGSSAPPPYRAYTTLRVPPQLNAPFTEKRGSADSLVEAVLISEGLGLYARDPKFVAFA
KREIADACHMTVDEMESAASDLLGSGSHAFLSGAAVDSAGLYSDEEPIKTSRDEDELADE
MTCVTSF
NT seq
6144 nt
NT seq
+upstream
nt +downstream
nt
atgttcgaggagagccacaaaaggggtggttgcaatggctacaccaatgctgtggacggg
gagaatgatgggggggagggggaagaagaggaagaaggaggagaccagggggaagaggtg
gacaacgaaggaggagagagagatctggagtgggatgaagaactggacggaggaaatgaa
gggggagtgaggatgacaagaaccgatacgcttcattcaaccaccagttcaaccgcaact
cagagaagacggggacagcattccaagaaacaggcacaaggcaataatcaagtccagcgc
gctccacgagcgctttactgtctgaagctgaacaatcccatcagacgagcggcgctgtca
atcgtggagtggaaaccttttgacatctttatcctgttagccatctttgctaactgtgtt
gccctgggagtttcaaaaccatttcccgaggatgactccaactctacaaaccacgacctg
gaacaagtggagtacgtgttcctcatcatcttcaccgtggagacctttctgaagatcctg
gcctatggtctggtcatgcaccccagctcttacatccgcaacggctggaacctgctggac
tttgtcatcgtcattgtggggttgttcagtgtggttttggagaccatgactcataagtcg
actggtgagcaggccaccactcatcacatgcctggaaagccaggaggtcttgacgtcaaa
gctctaagagctttcagagtccttcggcccctcaggctggtttctggagtccccagtctg
cagatcgtgctgaactccatcatgaaggccatggttcctctgcttcacatcgccctgctg
gtcctctttgtcatcatcatctacgccatcatcggcctggagctcttcattggccgcatg
cacaggacgtgttactacacccgaacagataactacgtggaggatgaaccggtgccgtgt
gcgtttgccggtcacggccgccagtgcatcataaatgggtcagagtgcagaggaggctgg
gacggccccaacggaggaatcaccaactttgacaactttttcttcgccatgctgacggtg
ttccagtgcatcaccatggagggctggacggacgtcctgtactggatgaacgacgccatc
ggcttcgagctgccatgggtctacttcgtcagtctggtgatcttcggttccttctttgtc
ctcaaccttgttctgggagtcctgagcggagagttcagtaaagaaagggagaaggccaaa
gctcggggagatttccagaaactgcgggagaagcagcagatggaggaggatctgtgcgga
tacatggactggatcactcaggcggaggacatggatgacctggatgaggatggaaacccg
agaccatctctgggggacctgtccgataagaagcggggaaagttcggatggttcagccac
tccaatgaaactcacgcgagtcttccagccagtgagacagcctccgaaaacacagagaac
attgatgaagaacacaccaactgctgccaggcctgctgcgctcggatgatgaagatcggc
tgctgtcggacgctgcgccgctggaaccgcgtctgccgcaggaactgccgcacggctgtc
aaatctgtaaccttctactggctggttctgctgctcgtcttcctcaacacgtccctcagt
gcttctgagcactacaaccagcctgaatggctgacacaagtccaagacattgccaacaag
gtgctgctgtctctcttcacggtggagatgctgctgaagatgtacagcctgggcctggct
cattacttcacggcgttcttcaaccgcttcgactgctttgtggtgtgcggcggcatcatg
gagaccatcctggttgagttggagatcatgccgcctttgggcatctccgtgctgcgctgc
gtccgcctgctgaggatcttcaaggttacgcgccattggacggctctctccaacctggtg
gcgtcgctgctgaactccatgaagtccattgcctccctgctgctgctgctcttcctcttc
ctcatcatcttcgctctgctcggaatgcagctgtttggaggaaagttcaactttgatgag
acgcagaccaaacgcagcacgtttgacgccttcccacaggcgctgctcacctgtttccag
atcctgacaggtgaggactggaacgtggtcatgtacgatggcatcatggcatacggcggc
cctgtgtttccagggatgattgtctgcatttacttcgtcatcctcttcatctgtggtaac
tacatcctgctgaatgtcttcttggccatcgctgtggacaagaagaagaaggaaggggct
gaggaggcagaggaagaggaggtgaaggtggatgtggacgaagacacagagtatgaggaa
gaggaagagctccctgagggagatgaggatgacggaggggtccagttgaagatggcagat
ctcactccacctaaagagaaagttctccccattcctgaaggcagcgcattcttttgcctc
agcaaaacaaacccgatccgcgtggcttgccatactctgatccaccatcacatcttcacc
aacctgatcctggtcttcatcatcctcagcagctgctcgctggccgctgaagatccaatc
agagcgcactccttcaggaataacattctgggttacgcagattacgccttcacctccatc
ttcaccgtggagatcctgctgaagatgacggtgcacggagccttcctccaccagggctcc
ttctgcaggaactggttcaacctcctggacctgctggtggtcagcgtctcgctggtctcc
ttcttcctgcactccagcgccatctcagtggtgaagatcctgagagtcctgcgggttctg
cgacctctgagagccataaacagagccaaaggactgaagcacgtggtccagtgcgtgttc
gtggccatcaggaccatcgggaacatcatgatcgtcaccacgctgctgcagttcatgttc
gcctgcatcggagttcagctcttcaagggtaaattttaccgctgcacagacgaggccaaa
agcactcctgaacagtgcaaagggacgttcgtggtgtacaaagacggagacgtgacccac
cccatggtccgacagcggatctggctcaacagcgacttcaactttgataacgtcttgatg
gggatgatggcgctcttcaccgtgtccacctttgagggatggcctgcgctgctgtacaaa
gccatagacgccaacggcgagaactctggtcccatctacaactacagagtggagatctcc
atcttcttcattgtatacatcatcatcatcgctttcttcatgatgaacattttcgtgggt
tttgtcatcatcaccttcagggagcaaggagagcaggagtacaagaactgcgaactggac
aagaaccagcgtcagtgtgtggagtacgccttgaaggctcagcctctgaaactgtacata
ccaaagaacccggtccagtataagttctggtccatcatcaactcgacgggtttcgagtac
gtgatgtttgtcctgatccttctcaacaccgtcactctggctgtgcagcactatgagcag
tccaaaaccttcagctacatcatggacatcctcaacatggttttcactggacttttcact
gtggagatgctgctgaagctgctcgctctgagacctcggcactactttgtggacccctgg
aactcttttgatgctctgattgtggtgggcagcgtggtcgacatcgtggtcacagagttt
agtagtggggaggacagctcccgggtgtccatcacattcttcaggctgtttcgagtgatg
cgattggtcaagctgctgagcaaaggggaggggattcgcactctgctgtggacgttcatc
aaatcgttgcaggcacttccgtatgtggctttgctcatcgccatgatcttcttcatctac
gccgtcatcggcatgcagacgtttgggaaaattgcgatgcaggattacactcagatcaac
aggaacaacaacttccagacttttccacaggctgtcctcctgctcttcaggtgtgccaca
ggtgaggcgtggcaggagatcatgctcgccagtcttccaggtaaacgctgcgacccagag
tccgactacgaaccaggagaggagttcagctgcggcagcaacttcgccattgtttatttc
atcagcttcttcatgctgtgtgccttcctgatcatcaacttgtttgttgccgtcatcatg
gacaactttgactatctgacacgtgattggtccattctggggcctcatcatctagacgag
ttcaagaggatctggtctgagtacgatccagaggccaaaggtcgaatcaagcatctggac
gtggtggctctgctgcgcaggattcagcctccattaggttttgggaagctctgtccacac
agagtggcctgtaagcgtctggtggccatgaacatgcctctgaatgctgacgggatggtg
accttcaacgccactctctttgctctggttcgcactgcgctgaagatcaagacagagggt
catcctgagcaggagaacgaggaactgagggccatcatcaagaagatctggaagagaatg
aagcccaaactgctggatgaagtcatccctccacatgaagaagaagaagtcactgttgga
aagttctatgcgacattcctgatccaggactactttagaaagttccggaaacgaaaagag
aagggagatctgacaggagacccgaactccaccaatccgtcggccgtccagttatgcaaa
gcaggtctgaagactctccaggacctgggtccagagatgcgtttggctctgaatgaagac
ctggatgaggaggaggccatgctggaggaagaggagatggaggacagcgcctcctacatg
gctgaaaaccattttgaagcagagaaagagagacgaggctccatactaacacccactggt
ttgggtggtgtcctggctgacagcggctcctccaacggatgcctggtccaccgagtcggc
tccttcaccaagatggccaatgggaatgaacacggggaccattctcgccgcaaagaaagc
ttgaggtcttctttcaatcaacgccattcattggggaagagcagccttctagatcacgct
cacagaagaccatcgttctacaaaaatgaacggaaggaatcaagagaccggtcgtggagg
aacggagatgtggaggcgtatggagaacagggctactacagcagagaggaggacagtgag
agcatcacttccagagacagggatcaccccatcgggaacaccgcatgcactaacagcagc
tatggtgacggctacagtgaaggcaggaggacaacccgaagacgcctgctgccggccacg
cccacaggtcggaagccctcctttaacattcagtgtctgaggcggcagggcagcagcgat
gacctgcccatccccgggacgtaccacccgacgtcaccgcagcgccgctcgcacgctcag
gtttttaacagctatgattcccggcgctcctccggacactccacggcgacctcctccacc
tcgtgggcgaacccctgtcctcgccgtggtcggctcctttatgctcctctcatcctggtg
gaggaggagggcagcccgccctggttgggtggggggcctggtggagagggcaagagagga
ggagcagaaagaacaggtgtcagcacaacaagtgccgtccccagaccagcctggtacgga
gcaactccaggatcctcagctccgcctccgtaccgggcttacaccacccttcgagtcccc
ccccagctcaacgctccattcacagagaagcgcgggtcagctgacagtctggtggaggcg
gttctgatctcagaaggacttggcctttacgctcgggatccaaagtttgtggcgtttgcc
aagcgggaaatcgctgacgcgtgccacatgactgtggatgagatggagtctgccgccagc
gacctgctgggttctgggagccacgccttcctcagcggcgctgccgtcgactcggccggg
ctctacagcgacgaggagccaatcaagacgagccgcgatgaggacgagctggcggacgaa
atgacatgtgtcacgtcattctga
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integrated database retrieval system
