Oryzias melastigma (Indian medaka): 112162086
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Entry
112162086 CDS
T07439
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM8
KO
K12001
tripartite motif-containing protein 8 [EC:
2.3.2.27
]
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oml04121
]
112162086
Enzymes [BR:
oml01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112162086
Ubiquitin system [BR:
oml04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
112162086
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4_4
zf-C3HC4
zf-C3HC4_2
zf-RING_2
zf-RING_5
zf-RING_6
FliD_C
RT_RNaseH_2
DUF1664
Baculo_PEP_C
Motif
Other DBs
NCBI-GeneID:
112162086
NCBI-ProteinID:
XP_024153503
Ensembl:
ENSOMEG00000002659
LinkDB
All DBs
Position
LG15:complement(22889047..22900777)
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AA seq
565 aa
AA seq
DB search
MDESWKNCFEEELLCPICLNVFDEPIQLPCKHNFCKGCISEAWAKDSAAVRCPECNHDYD
QKPTLEKNFKLANIVKRFNALNSDKVPPVLHCVLCRRGPPLPVRKVCLRCKEPCCQTHIQ
THLQQPCTAPGHLLVDAEELSAWTCPSHEEYRLLHCEEEQVALCPFCCLSHCTNQRHTVR
DVDTQRVQMQAMLMRQQDRLEGRVQNIDEQLNKLESDKTLMKDAVSELKDRVRAQYRRMQ
ALLQANQEETMQMLESTYMMYVRKNSQQSLQLNEKRQEAEKLLSSVQTVFQRAESVNFMK
NTKPYQLLMDRSNTHLSAVIPSVKVGQLNSHHFLSDLSTREKNLRKMLEEPFNEASILEL
VQSLGSSAASQLGMSSGLQKRKYNMAFLESNTENSTSQDPPPLLYSGKKPFLPDQSHRIS
SMYSSDVLPQNPHSGPGHSHLLETTAHHMVGLGSSSSHHSGNLFPSSHFPSGASSQQAMY
EGRKVLMCTLNNCCCSRAPAARAHPPYPASDSFPSVTSQEFPPLPSSQTLQHFPMRGLVE
ASQGARHPDFYGLYGQSSTKHYGTK
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atggatgagagctggaaaaactgcttcgaagaggagcttctttgtcccatctgcctgaat
gttttcgatgagccaatccagctgccatgcaagcataacttctgcaagggttgcatttct
gaggcatgggccaaagacagcgcagccgtccgctgtccagaatgcaaccacgactatgac
cagaagcccaccctggagaagaacttcaagcttgccaacatcgtgaagcgattcaatgct
ctcaacagtgacaaggtcccccccgtgctgcactgcgtcctctgcagacgaggccccccg
ctgcctgtcaggaaagtgtgtctgcgctgcaaggaaccctgctgccagactcacatccaa
acccacctccagcagccgtgcacggcaccaggacacctgctggtggatgcagaggagctg
agcgcctggacctgtcccagtcatgaggagtacaggctgctgcactgtgaggaggagcag
gtggctctgtgtccgttctgctgcctctcccactgcactaaccaaagacacacagtgcgt
gatgtggacacacagcgcgtgcaaatgcaggccatgctaatgaggcaacaagaccggctg
gagggtcgtgtgcagaacatcgatgagcagctcaacaagctggagtcagacaagacgctg
atgaaggacgcggtgtctgagctgaaggatcgtgtgagagctcagtatcggaggatgcag
gcactgctgcaagcaaaccaggaggagaccatgcagatgctggagagcacttacatgatg
tatgtgaggaaaaactcccagcagtctttgcagctcaatgagaagagacaggaagcagaa
aaactcctgagctccgtgcaaaccgttttccagagagcggagagtgtgaacttcatgaag
aacacaaaaccataccagctgctgatggacaggtcaaacacacacctcagtgctgtgatc
ccgtcagtcaaagtgggccagctcaactcccatcatttcctgtctgacctgtctacacga
gagaagaatttgcggaaaatgctagaagaaccgttcaatgaggcgtccatcctggagctg
gttcagtctctgggcagctccgctgcctcccagctggggatgagttcaggactacagaag
aggaagtacaacatggcctttctggagagtaacactgaaaactccacctcccaggatcct
ccacctttgctctacagtgggaagaagcccttcctgcccgaccagagtcaccgtatttca
tctatgtattcctccgatgtcctcccccagaatcctcacagtggcccgggccacagtcac
ctccttgagaccactgcccatcacatggtgggtttggggtccagttccagccaccactca
gggaacttatttccgtcctcccacttccccagtggagcttcctcgcaacaagccatgtac
gaggggaggaaagtgctcatgtgcacgctgaacaactgctgctgctctcgagcacccgcc
gcccgcgcccatcctccctacccggcctcggactccttcccctccgtgacctctcaggag
ttccccccgcttccttcaagccaaacactgcagcattttcccatgagggggctggtggaa
gcctcgcagggcgccaggcaccccgacttctacgggctgtacggccagtcttcaaccaag
cattacggaaccaagtaa
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