Oncorhynchus mykiss (rainbow trout): 110499370
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Entry
110499370 CDS
T07259
Symbol
col21a1
Name
(RefSeq) collagen alpha-1(XXI) chain isoform X1
KO
K16629
collagen type XXI alpha
Organism
omy
Oncorhynchus mykiss (rainbow trout)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
VWA
VWA_2
Laminin_G_2
DUF1194
Motif
Other DBs
NCBI-GeneID:
110499370
NCBI-ProteinID:
XP_021432143
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Position
20:34225871..34271548
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AA seq
968 aa
AA seq
DB search
MGCKTRSMHCVLRCVCFMLLHLSCTAQDEDMRFSCKTVASDLVFILDGSWSVADVNFEIV
KRWLVNITTSFNIGQKFTQIGVVQYSDDPIINIPLGKHLHIKDLIRAMESIDYMGGNTRT
GTAIQFASDKLFNLSERGPKGVARIAVVLTDGKSQDEVKAAAEAARRRGIIIFAIGVGSE
TEEAELNAIGNKPSSNYVFYVDDYKAISKIRETIRQKLCEETVCPSSISVDNGDVKGFDI
LQYLNLAKKVKKTQGSFYGSKAFQVTSRVDLSESTTNLFPDGLPPSYVFVSTLRYKGSLL
REEWDLWRVQTNNGKPQMAVTLNGFERNVKFTTTSVAPGDTQTVVFQQEPSKKLFDENWH
QLRLLVTEQDVTLYVDDLEIETMPLEPPVGIFINGKTQIGKYVSKETTVPFEIMKLRIYC
DPEQNNRETACEIPGVDGECANGPGDIDVDPTPEPCTCPPGPPGLQGMKGEAGTMGNPGQ
AGPAGADGKPGVPGNRGIPGPQGPTGTEGRRGVDGNKGEQGRPGDSGERGVPGLPGPLGQ
AGEKGSMGLSGGSGLAGKDGLVGEKGARGFSGPSGHPGVPGLPGRDGKNGVPGQIGQKGE
VGAAGIPGLDGREGHPGMPGEPGNEGQSGTKGEDGLPGPKGAKGSTGLSGDNGLPGEPGS
SGQPGPKGSKGESGLPGQPGVPGQEGKSGDHGGAGQPGHPGMPGLTGPKGQRGDPGERGG
EGLRGEKGDMGIPGNHGSNGSSGQKGEKGTTGDPGQRGLGGHQGQPGLSGQTGPPGPRGQ
SGDVGPLGPPGLEGRPGREMSKQIIQEICREVLRLEMPSLLLSNQQLSNCDHCQTRDGTP
GVPGPVGPQGSTGFPGNPGSSGQPGHPGRPGHPGMLGLKGDPGLKGEKGSQGRTEIGDPG
TPGPPGQMGPQGYSKPGHPGKPGAPGLNGEEGKRGNPGVPGQPGVCHLSMCYGVMMRSRD
PFSKGPNY
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgggttgcaaaacaagatccatgcattgtgtcttgcggtgtgtgtgcttcatgctcctt
cacttgtcttgtacagcacaagatgaggacatgagattcagttgtaagactgttgcaagt
gatctggtctttatcctagacggctcatggagtgtagctgatgtgaactttgaaatagtc
aagcgatggctagtcaacattaccacaagctttaacatcggacagaagttcacccagatc
ggagtggtccaatacagtgatgatccaatcataaatattccactagggaagcaccttcat
atcaaggatctcattagagccatggaatccattgactacatgggaggaaatacaaggact
gggacggccatacagtttgctagcgacaaactgtttaacctgtctgagagaggcccaaag
ggcgttgctagaatcgctgtggtcctaacagatgggaagtcacaagatgaggtgaaagct
gcagcagaggcagccaggagaagaggaataatcatctttgccattggtgtgggatctgag
acagaagaggcagagttgaatgctattggaaacaagccttcctccaactacgtgttttac
gttgatgactataaagctatttccaagatccgtgagaccataaggcagaaattgtgtgaa
gagactgtttgtccaagcagtatctcagtcgataacggtgatgtgaagggcttcgatatt
ctacagtatcttaatttggccaaaaaggtcaaaaaaactcaagggtctttctatggctcc
aaagccttccaggtgacatctcgcgttgacctgagtgaaagcacgacgaacttgtttcca
gacggcctgcctccgtcctacgtctttgtgtccacactgaggtacaaggggtctctgctc
agggaagagtgggacttatggagggtacagaccaataacgggaaaccacaaatggctgtc
acacttaacggatttgaacgcaatgtcaagttcactacaaccagtgtagcaccaggtgat
actcagacagtggtcttccaacaagaaccttccaagaaactatttgatgagaactggcac
cagcttcgcctactggtcactgagcaggatgttaccctgtatgttgatgacctggaaatt
gaaaccatgccattggaacctcctgttggtatcttcattaatgggaagacccagatcgga
aagtatgtcagcaaagagacgactgtaccatttgagattatgaaactcaggatctactgc
gaccccgagcagaacaaccgtgagactgcctgtgaaatacctggagttgacggcgagtgc
gccaatggtcctggtgacatagacgtggaccccactccagaaccatgtacctgtcctccc
ggacctcctggtcttcaaggaatgaagggggaagcaggaacaatggggaacccaggtcaa
gctggtcctgctggtgctgatggtaagcctggtgtgcctggtaaccgagggattcctgga
ccgcagggtccaactgggacagaggggcgacgcggggttgatggcaacaagggagaacaa
ggacggcctggtgattcgggtgaaagaggggttccgggattacctgggccattgggtcaa
gcaggtgaaaagggctctatgggtctttcagggggatcaggacttgccggcaaagatggc
ctagtgggagaaaaaggagccaggggattctctgggccatccggacatccgggagtacca
ggtttacctggaagggatggaaagaacggagtcccaggacaaatcggtcaaaagggagag
gttggagcagctggcatccctggtctagacggaagggagggccatcctggtatgcctggc
gagcctggaaatgagggccagagtggaactaagggtgaagatggtttaccaggaccgaag
ggagccaaaggttccactggactatctggggacaatggattgcctggtgaacctggatca
tcaggacaacctggacctaagggcagcaaaggtgaaagtggacttccaggtcaaccaggg
gttccaggacaggagggcaagtcaggtgaccatggtggagcaggtcagccaggacaccca
ggaatgccaggcctgacaggacctaagggacaaaggggagatccaggtgaacgaggaggg
gagggattgagaggtgaaaaaggagatatgggaattccagggaatcatggctctaatggc
tcatcgggacaaaaaggagagaaagggacaacaggagaccccggtcagaggggactagga
ggtcaccaaggccagccaggactatctgggcagacaggcccacctgggcctcgaggacag
agcggggacgttggccctcttgggccacctggactagaggggagacctggaagggagatg
tccaagcaaataattcaggaaatatgcagagaggtacttagattggagatgccttcacta
ctcctcagtaaccagcagctgagtaactgtgaccactgtcagaccagggacgggactccg
ggggtaccaggcccggttgggccccaaggatctacaggctttccagggaaccctggttcc
agtggacagccaggtcatccaggtcgacctgggcatcctgggatgcttggcttgaaagga
gatcctggtttaaagggtgagaagggcagtcaaggaagaacagagattggagatccggga
acaccagggcctccaggtcaaatgggtccccaggggtacagtaaaccaggccatccaggg
aagccaggagcccctggcttaaacggggaggaggggaagagaggtaaccctggggtcccg
ggccagccgggggtgtgtcatctatccatgtgttacggtgtcatgatgaggagcagggat
ccttttagtaaaggaccaaactattga
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