Oncorhynchus nerka (sockeye salmon): 115128771
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Entry
115128771 CDS
T07952
Name
(RefSeq) LOW QUALITY PROTEIN: protein capicua homolog
KO
K20225
capicua transcriptional repressor
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
one03000
]
115128771
Transcription factors [BR:
one03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
115128771
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
115128771
NCBI-ProteinID:
XP_029514767
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All DBs
Position
LG4:complement(45034476..45063098)
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AA seq
1642 aa
AA seq
DB search
RRSRDSSEASSRGGDSRPLLVLPSLLPQDLSRFDFDECEAATMLVSLVSSAGATPSFSPI
SNQSPFSPTPSPSPSPLFVFRPATFSPITAPPSLTPRRHRHLSGTKVGTPGSERERHLSG
IVPTFQTNLTFTVPMSPSKRKLDALPPPLPLSAQDYSKPDQQLGENIGLSPAAFRVLSPQ
SQPTTPSSLSFPRPPEPPPSRPRPPTPVPATRRDPCETPSPVIVRNPDVPLAKFTDGPLV
RRGGGGRSSREHSQPLHLATGLQAPVPINAVAGPPHLAHSAHHSVVAPPPSPRLAPPSPA
LDQEPNATPLSNRLLPSSPSESLNPAPRKDIIIGRPGTVWTNVEPRSVPVFPWHSLVPFL
EPSQSSAAAQPADGQQLVNQSKEPRCGVAVVSDGWVGPPDAEQGSPSRPPPSSNDNDPPA
GRAERGGADSETESDADDPFFPGVANDPAPSTGPIKRRTQSLSALPKDGDRKREKDHIRR
PMNAFMIFSKRHRALVHQRHPNQDNRTVSKILGEWWYALGPKEKQKYHDLAFQVKEAHFK
AHPDWKWCNKDRRKSISEGRETPGAKEARERSMSESTEPESVSQGMEAKGAAGPDWPGGS
ERHAGAYSGQLPRPRAFSQSAVHSLERRERARDVEKLCRDGAGSFRSRPPTLSLTQCGAS
EDVTSDEERMVICEEEGDDDVMEDSCPEGSIDLKCKERVTDSDEDEPDGQRVFQPVVRSS
LPYATSTSHADSHSDSTKGNTGGSTGESSERKRKRGMEGGEEGSGESKRGGGGGQVPSNS
IPGSAPFTSTPALGYGLTQVLGAVRMAPTMVTNVVCPIASTPIPITSKPMEGHIALSALP
GEKKATLLIGGPGAVGGPITAGGGYLSSSSPNPVSVGPGGLQVTSLVLGGAFPNQSIQLI
APPQHLLSPTHSTLPLPLPLLQPQFLPAASLTSAGGAKPGLTQVQYILPILSSVSANPKS
PSPQLTQQPTGILTLPSTPPTHVFQANGIHSGAGAGIRYAAVGGVSPGARAQAQSPVLQS
KMLVPMATVRTGSTPPQPISHVAPPLPVQNGALPGNKIIHIAPMPMVQTNVHPAGAVHPG
SPFPVSMATATVMTPGIKSPQTVLLTSPPTRITYVQSSTGVVSTATVQAPLSPGPTYLPS
SLGFTAIAPAGQALKQPLVAGQPPLLAPALSPGAPGTGRQLLTAIYPAPSITLASGVVAM
TSVPPNLAQEVSAQSSASAVGVQGSKDVTRSHEEGMPHLTAELESQVEGQAQRKNKAQIK
KENTTEDVEAYSKPDANSMAMSSSKIPTGSEEDGGRASHMKEENTDNDRDYARGNGERER
EIKKESGTPEPEESREAEDWPHEGHNKGDSGNGGHSKEAGPREPLHPTTGLDPPPPPPQT
DRDAPPSAKKTKFRPPPLKKPSDAIEKVLSGSYFEERFAELPEFRPEEVLPSPTLQSLAT
SPRAILGSYRKKRRNSTDLDSSAEDPSSPRRKAAARSRLSSCSSEPNTPKSEVKCEGDIF
TFDRAGAESEDVLGEMDKVPYSSLRRTLDQRRALVMQLFQEHGFFPSAQATAAFQARYSD
TFPTKLCLQLKIREVRQKIMQTATPGTPGISEPGGSTTGVMGSTDSASAAIGSSNTNTRD
GTGTEPGERGRSPEEPRNVGKL
NT seq
4929 nt
NT seq
+upstream
nt +downstream
nt
cgacggtcgcgagacagcagcgaagcgagcagtaggggaggggattcacgacccctcctg
gtcctgccctcgctcctgccccaggacttatcacgcttcgactttgatgagtgcgaggcg
gccacaatgctggtatctctggtcagctccgctggagcaactccttccttctctcctatc
tccaaccagtcgcccttctcgcccacaccgtcgccctcgccttccccgcttttcgtcttc
cgcccggccaccttcagccccatcacggcgccgccttcgctcacccctcgccgccaccgc
cacctgagcggcactaaggtgggtacgccgggctcggagcgtgagcgccacctgtcgggc
atcgtacccaccttccagaccaacctcaccttcactgtgcccatgagccccagcaagcgg
aaacttgatgcccttcctccgcccctgcccctctctgcccaggattactccaagcccgac
cagcagttaggggagaatataggcctaagcccagccgccttcagggtgctctctcctcag
agccagcccaccaccccctcctccctctccttcccccggcccccggagccgccacccagc
cgcccccgtcctccgaccccagtccccgccactcgtcgtgacccctgcgagactccctcc
cccgtcatcgtgcggaaccccgacgtccccctggccaagttcacagatggacccctggtg
aggaggggaggaggaggccgctcctccagagagcacagccagcccctgcaccttgccacc
ggcctccaagcacccgtgcccatcaacgccgtcgccggccccccccaccttgcccactca
gcccaccactcagtggtggctccgcctccatctcctcgactggctccgccctctccagct
ctggatcaggagcccaatgccacccccctctccaaccgcctgctcccctcatcgccatcc
gagtccctcaaccctgcaccccgcaaggacatcatcattggacgacccgggacagtatgg
accaatgtggagcctcgttcagtgccagtgtttccttggcattcattggtccctttcctg
gagcccagccaatcgagtgcggctgcccagcccgctgatggccaacagcttgtcaatcag
agcaaagagccccgttgtggggtggccgtagtgagtgacggatgggtgggtccaccagac
gcagagcaagggtctccatcccgcccaccaccgtcctccaatgacaacgaccccccagct
ggaagagcagaaagaggtggagccgacagcgagacggagagcgatgcagacgacccgttt
tttccgggtgtagccaatgatcctgccccgtctacgggccctatcaagaggcgcactcag
tccctcagcgcccttcccaaagatggagacagaaagagggaaaaggaccacattcggcgg
ccgatgaacgcgttcatgattttcagcaagcgtcaccgggcactggttcatcagaggcac
cccaaccaggacaaccgcacggtcagcaagatcctgggcgagtggtggtacgccctgggg
cccaaagagaagcagaagtaccacgacctcgccttccaggtgaaagaggctcacttcaag
gcccacccagactggaagtggtgtaacaaggacaggaggaagtctatctctgagggccga
gagaccccaggggccaaagaggcacgcgagaggagcatgtcggagagcacagagcctgag
tcagtctctcagggaatggaggcgaagggtgcggcaggcccggactggcctgggggctct
gagcgtcatgcgggcgcctacagtggtcagctccctcgcccccgggccttctcccagagt
gcagtacacagcctggagaggagggagcgggccagagatgtggagaagttgtgtcgagat
ggggcaggctcattccgcagccgcccccctactctctccctgacacagtgtggggccagc
gaggacgtgaccagcgacgaggagcgcatggtcatctgtgaggaagagggggacgatgat
gtcatggaggactcgtgccctgagggatccatagacctcaagtgtaaagagagagtgact
gatagtgacgaggatgagccggatggacagcgagtcttccagccagtggtccgctcctct
ctcccctatgccaccagcacctcccacgccgactctcactccgactctaccaaggggaac
acaggggggagcactggagagagctctgagaggaagagaaaacgagggatggagggagga
gaagagggaagtggagaatccaaaagaggaggtggaggggggcaggttccctctaattcc
atccctggatcggcgcccttcacctcgacccccgctctgggttatggactcacccaggtg
ctcggtgcagtccggatggcccccactatggtgaccaatgtggtatgccccatcgccagc
acgcccatccctatcaccagcaagccaatggaaggtcacatcgccctcagtgccctccct
ggggagaagaaagccacgcttctgattggtggaccgggagcagtaggtgggcctatcaca
gcagggggtgggtacttgtcctcgtcctctcccaatcccgtgagtgtggggccggggggg
ctgcaggtcaccagtctagtgctgggaggagctttccccaaccagtctatacagctcata
gccccgcctcagcatctcttaagtcccacccacagcaccctgccacttcccctccccctg
ctgcagccccagttccttcctgccgcctctctcacctccgctggcggtgccaagcctggc
ctcacccaggtgcagtacatcctgcccatcctgtcttctgtcagtgccaaccccaagagc
ccctccccccagctaacccagcagccaaccggcatcctcacgctgccctccactccgccc
acccatgtcttccaggccaatggaatacattcgggggcaggagcgggaataagatatgcc
gcagtgggaggggtcagtcctggagcaagagcccaagcccagtctccagtcttgcagagc
aagatgttggttcccatggcaacagtgagaacaggctctactcctcctcagcccatctcc
cacgtggcccctccccttcctgtgcaaaatggtgctctaccaggaaacaagatcatccac
atcgcccccatgccaatggtccagacaaatgtccaccctgctggagcagtgcatcctggg
agtcccttcccagtatccatggcaacagccactgtgatgactccgggcatcaaatcccct
cagactgtgttgctgacctcgcctccaacaaggatcacttatgtccaatccagcactgga
gtggtctccacggcaacggtccaggcccctctctctccaggacccacctacctgccgtcg
tctctgggcttcaccgccattgctccggccggccaggccctgaagcagcctctcgtagcg
ggccaaccgcccttgctagccccagccctttcccctggagccccggggacgggacgtcaa
ctcctcaccgccatctacccggccccaagcatcaccctagcgtcaggtgtggtcgccatg
acctccgtgccccccaatttggctcaagaagtgtctgcccaatcatcagcctcggctgtc
ggcgtgcagggttcaaaggacgttacccggtcacatgaagagggaatgccacacctgact
gcagagttggagtcacaggtggagggccaggcccaacggaagaacaaggctcagataaag
aaagagaatacgacggaggatgtcgaggcatatagcaaacctgatgctaactcaatggct
atgtccagcagcaaaataccaacagggagtgaagaagacggtggtcgagccagccacatg
aaagaagagaatacggacaatgaccgagattatgccagagggaatggagagagggagagg
gagataaagaaggagagtgggacgcctgaaccagaggagtccagggaggcagaggattgg
ccccatgagggccacaacaaaggggacagtggcaacgggggccacagcaaagaggctgga
ccgagggaacctctccaccctaccacaggactggaccctcctccgcctcccccacagact
gacagggacgcgcccccctcagccaagaagaccaaattccgccccccgccgctcaaaaag
ccctcagacgccattgaaaaggtcctgtcggggtcctatttcgaggagcgctttgccgag
ctgccagagttcaggccagaagaagtgctgccctctcccaccctccagagtctggccacc
tccccccgagccatactgggcagctaccggaagaagaggaggaactccacagacctggac
tcgtctgcagaggaccccagctctcccaggaggaaggctgccgctcggagccgtctctcc
agctgcagctcggagcccaacacaccaaagagcgaggtcaagtgtgagggggacatcttc
accttcgacagagctggtgctgagtctgaggatgtcctgggggagatggacaaagtgccg
tactcctctctccggaggactctggaccagcgcagggctctcgttatgcagctcttccag
gaacacggcttcttcccttcagctcaggccactgcagccttccaggcacgatactcagac
accttccccaccaaactgtgtctgcagctgaagatcagggaggtgaggcagaagatcatg
cagacagccacacctggaacccccggaatctctgagcccggcggttcaacaacaggggtc
atgggttcaacggactccgcctcggccgccatcggctcctccaataccaacactcgagat
ggtacagggacggagccaggagaaagagggcggagtcccgaggagcccaggaacgtgggc
aaattgtag
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