Oreochromis niloticus (Nile tilapia): 100693449
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Entry
100693449 CDS
T06104
Symbol
cdc40
Name
(RefSeq) pre-mRNA-processing factor 17
KO
K12816
pre-mRNA-processing factor 17
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100693449 (cdc40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
onl03041
]
100693449 (cdc40)
Spliceosome [BR:
onl03041
]
Complex C
Other components
Step II factors
100693449 (cdc40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
ANAPC4_WD40
PQQ_2
Motif
Other DBs
NCBI-GeneID:
100693449
NCBI-ProteinID:
XP_003449989
Ensembl:
ENSONIG00000013431
UniProt:
I3K6Z2
LinkDB
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Position
LG15:10626565..10643736
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AA seq
581 aa
AA seq
DB search
MSAAIASLVSYGSDSDSENESESNTSVEKVNPVDPDATAHLKPLQSENSMSLAVLNSAPE
VAVKEAVETGIHLDPALKEVTYNPTYETMFAPEFGPTNPFKSQQMAAPRNMLSGYAEPAH
VNDFMFEQQRRTFSSYGYALDPSVDTHESSSNTYIGAVEEAEKHKGLTVFESGLKKSQKR
KKVKGGDAGEIDNYLGPWAKYADEKDVAKPTEDEQKELDEITAKRQKKGRNEEDAPSEEK
TILHVKDMYDYQGRSYLHVPQDVGINLRSVDTPDKCYLPKKQIHVWSGHTKGVSAIRLFP
NSGHLLLSCSMDCKIKLWEVYGERRCLRTFIGHSKAVRDICFNNTGTQFLSAAYDRYIKL
WDSETGQCISHFTNRKVPYCVKFNPDEDKQNLLVAGMSDKKIVQWDIRTGEVVQEYDRHL
GAVNTITFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLAC
QSMDNQILIFGAQNRFRLNKKKVFKGHMVAGYACQVDFSPDMSYVVSGDADGKLNIWDWK
TTKLYHRIKAHDKVCISALWHPHETSKVITCGWDGQIKLWD
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcagccatagcttccctcgtttcatacggcagtgattccgattcagaaaatgag
tctgaatctaatacaagtgttgaaaaagtgaacccagtcgatccggatgctacggctcac
cttaaaccgttgcagtcggagaacagtatgtctctggctgttttaaattctgcccctgag
gtcgctgtcaaggaggctgttgagacgggcatacacctggaccctgctctgaaagaagtc
acttataacccaacatatgaaaccatgtttgcacccgagtttggcccaacgaaccctttt
aaaagccagcagatggctgcccccaggaacatgttatctggctatgcagaacctgctcac
gtcaatgattttatgtttgaacagcaaaggaggactttctcctcatatggttatgcttta
gatccatctgttgatacacacgaatcatcctctaatacctacattggtgcagtggaagag
gctgagaaacataaaggtctgactgtgtttgagagcggtttgaagaagtcacagaagagg
aaaaaggtcaaaggtggagatgcaggagaaattgacaattaccttggaccatgggcaaaa
tatgcagatgagaaagatgtggccaaaccaacagaggatgagcagaaagagctggatgaa
attacagccaagaggcagaagaagggaaggaatgaggaagatgctccttcagaagagaaa
actattctccatgttaaagacatgtatgattaccagggcaggtcctaccttcatgtccca
caggatgtgggcatcaatctgcgttcggtggatactccagacaaatgttacctgccaaag
aaacagattcatgtctggtctggacacaccaagggtgtcagtgcaatccgattgtttcca
aactctggtcatctgctgctctcctgctccatggactgcaagatcaagctgtgggaggtg
tatggtgaaaggaggtgtcttcgaacttttattggccacagcaaagcagtgcgagacatt
tgtttcaacaacaccgggacccagttcctcagcgctgcatatgaccgctacattaaactg
tgggactctgagacaggccagtgtatctcccacttcaccaacaggaaggtaccatactgt
gtgaagttcaatccagatgaggacaaacagaaccttcttgtggccggcatgtcagataag
aagattgttcagtgggacatcaggacaggcgaggtggttcaggagtacgatcgtcacctg
ggcgccgtcaacaccatcacctttgttgacgagaaccgtcggtttgtcagcacatcagac
gacaagagtcttcgagtttgggagtgggacatccctgtggactttaagtacattgctgag
cccagtatgcactccatgccagctgtgactctctctcccaatggtaaatggctcgcctgt
cagtccatggacaaccagattttgatctttggagcccaaaaccgcttcagactaaacaaa
aagaaagtcttcaagggtcacatggtagctggctatgcatgccaagtggacttctctcca
gacatgagttatgtggtgtcaggagatgcagatggaaagctgaacatctgggactggaaa
accaccaagctttatcacaggatcaaggctcatgacaaggtgtgcatcagcgccctgtgg
catccacatgaaacctccaaggtcatcacctgtggctgggatggacagataaaactctgg
gattag
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