Oreochromis niloticus (Nile tilapia): 100694532
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Entry
100694532 CDS
T06104
Symbol
col1a1b
Name
(RefSeq) collagen, type I, alpha 1b precursor
KO
K06236
collagen type I alpha
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl04510
Focal adhesion
onl04512
ECM-receptor interaction
onl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100694532 (col1a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100694532 (col1a1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
100694532 (col1a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
onl00536
]
100694532 (col1a1b)
Glycosaminoglycan binding proteins [BR:
onl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100694532 (col1a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
TILa
Motif
Other DBs
NCBI-GeneID:
100694532
NCBI-ProteinID:
NP_001269818
Ensembl:
ENSONIG00000007944
UniProt:
G9M6I7
LinkDB
All DBs
Position
LG8:7556243..7574385
Genome browser
AA seq
1444 aa
AA seq
DB search
MFSFVDIRLALLLSATVLLARGQGEDDRTFGSCTLDGQLYNDKDVWKPEPCQICVCDSGT
VMCDEVICEDTSDCADPIIPDGECCPICPDGQEYTESTPVGPTGPKGDPGLPGYPGANGI
PGDPGPPGPPGPPGPPGLGGNFSPQYSDPSKSSGPPVPGPIGPMGPRGPPGPSGPPGPQG
FTGPPGEPGEPGASGPLGSRGPSGPPGKNGDDGEAGKPGRPGERGPAGPQGGRGFPGTPG
LPGIKGHRGFSGLDGAKGDSGPAGPKGEPGTSGENGIPGALGARGLPGERGRPGAPGPAG
ARGNDGNTGPAGPPGPTGPAGPPGFPGGAGAKGETGAPGGRGSEGPQGARGEPGNPGPAG
PAGPAGAPGSDGSPGSKGAPGAAGIAGAPGFPGARGPAGAQGAVGAPGPKGNNGDPGPSG
PKGEPGAKGEPGPAGIQGLPGPSGEEGKRGGRGEPGGAGPRGPPGERGAPGARGFPGADG
GAGGKGAPGERGAPGPLGAQGVTGESGSPGAPGAPGLKGVTGSPGSPGPDGKAGPAGAPG
QDGRPGPPGPGGSRGQPGIMGFPGPKGASGDSGKPGERGATGPAGAVGAPGKDGDVGAPG
PSGPAGPAGEKGEQGPAGSPGFQGLPGPQGSTGETGKPGEQGAPGEAGPSGPAGPRGDRG
FPGERGGPGIAGPTGPRGAPGPAGNDGPKGEPGAAGAPGGLGAPGMQGMPGERGAAGLPG
ARGDNGEPGGKGVDGAPGKDGPRGLTGPIGVPGPPGAQGEKGEAGAVGVAGPSGPRGSPG
DRGEPGPAGAAGFAGPPGVDGQPGAKGESGDSGPKGDAGPPGPTGPAGASGPQGPAGAPG
PKGARGSVGSPGATGFPGPAGRVGPPGPAGAGGAPGPGGPTGKDGARGTRGETGPAGRPG
EAGAAGPPGPSGEKGSAGSDGAPGAPGIPGPQGIAGQRGIVGLPGQRGERGFPGLPGPSG
EPGKQGSSGPVGERGAPGPAGPPGLSGPTGEAGREGSPGHDGAPGRDGPSGPKGDRGETG
LAGPPGPPGAPGAPGGVGPSGKTGDRGESGPSGPAGPAGPAGVRGPAGPAGAKGDRGEAG
EAGERGHKGHRGFTGASGLPGPAGPPGERGPAGASGPAGPRGPSGSNGAPGKDGVNGIPG
PIGPPGPRGRNGEMGPAGPPGPPGPAGPPGPPGSGFEFVSQPLQEKAPDPLRGGHYRADD
PNVMRDRDMEVDTTLKTLTQKVEKIRSPDGTQKSPARMCRDLRMCHPEWKSGMYWIDPNQ
GSPLDAVKVHCNMETGETCVYPSESTIPMKNWYLSKNIREKKHVWFSESMTGGFQFQYGS
DGADPEDVNIQMTFMRLMSNQASQNVTYHCKNSIAYMDSATGNLKKALLLQGSNDVEIRA
EGNSRFTYSVSEDGCTSHTGTWGKTVIDYKTSKTSRLPIIDIAPMDVGAPDQEFGVQVGP
VCFL
NT seq
4335 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggatattcggttagcgcttttgctcagcgcaacagtgcttttggcg
agaggtcaaggcgaggatgatagaacatttggcagctgcacattagatggacagttgtac
aacgacaaggatgtatggaaaccagaaccctgccagatctgcgtctgcgacagcggaacc
gtcatgtgcgacgaggtgatctgtgaggacacatccgactgcgccgatcccattattcca
gacggagagtgctgccctatctgccctgatggtcaagaatatactgagtcaactcccgta
ggacccactggccccaagggagacccgggtcttcctggctatcccggcgctaatggaatc
cctggcgatcctggcccacctggaccccctggcccccctggcccccctggccttggcgga
aacttctctcctcaatattctgacccctcaaaatctagtggcccacctgttcctggccca
ataggtcctatgggtccccgtggtcctcctggaccttccggccctcctggtcctcagggt
ttcactggacctcctggagagcctggtgagcccggagcttctggtccactgggttctcgt
ggtccttctggtccccctggaaagaacggagatgatggtgaggctggcaaacctggacgc
cccggtgagcgcggacctgccggacctcagggtggtcgtggattccctggcacccctgga
cttccaggcatcaagggacacagaggcttcagtggtctagatggagccaagggagactct
ggacctgctggccctaagggagagcctggcacttctggtgagaatggtatccccggtgcc
ctgggtgctcgtggtcttcccggagagagaggccgccctggagctcccggccctgctggt
gctcgtggtaatgatggcaacaccggtcctgctggtcctcctggacctactggacctgct
ggcccccctggattccctggcggtgctggtgctaagggagagactggtgctccaggaggc
cgtggatctgagggaccccagggagcacgtggtgagcctggtaaccccggacctgctgga
cccgctggacctgctggtgctcctggatctgatggttcccctggttctaagggtgctcct
ggtgctgctggtattgctggtgctcctggcttccccggtgctcgtggtcctgctggagct
cagggagctgttggtgctcctggccctaagggtaacaatggtgaccctggtccctctggt
cctaagggagagcctggtgccaagggagagcctggccccgctggaattcagggacttcct
ggcccctctggtgaggagggaaagagaggaggtcgtggagagcctggtggtgctggaccc
cgtggaccccctggagagcgtggtgcccctggtgctcgtggtttccctggtgctgatgga
ggtgctggtggcaagggtgccccaggtgagcgtggtgcccctggcccattgggagctcag
ggagtcactggtgagtctggaagccctggtgctcctggtgcccctggactgaagggtgtg
actggtagccctggaagccctggacctgatggcaaagctggacctgctggtgctcctgga
caagatggtcgccctggacctcctggccccggtggatccagaggacagcctggaattatg
ggattccccggacccaagggagcttctggtgattctggtaaacctggtgagagaggtgca
actggacctgctggcgctgttggtgctccaggcaaagacggtgatgttggtgctcctgga
ccttctggccccgctggacctgctggagagaaaggagagcagggacccgctggatctcct
ggattccagggacttcctggaccccaaggttctactggtgagactggcaagcctggtgag
cagggtgctcctggtgaggcaggaccttctggcccagctggaccaagaggtgacagagga
ttccctggtgagcgtggtggacctggcattgctggcccaaccggaccccgtggtgctcct
ggacccgctggtaacgatggacctaagggagagcctggtgctgctggtgcccccggtggt
ttgggagcccccggtatgcagggaatgcctggtgagcgtggagccgctggtctccctggt
gccagaggagataatggtgagcctggtggcaagggagttgatggtgcccctggcaaagat
ggcccacgtggtctgaccggtcctattggagtccccggacctcctggtgctcagggtgag
aagggtgaggctggtgctgttggagttgctggacctagtggtcctcgtggttcccctggt
gaccgtggtgagcctggacctgctggagctgccggatttgctggacctcctggtgttgat
ggtcagcctggtgctaagggagagagtggtgacagtggacccaagggagacgctggtcct
cctggacctaccggacctgctggagcttctggtcctcagggacctgctggagctcctgga
cccaaaggtgctcgtggtagtgttggttcccctggtgctactggtttccctggacctgct
ggaagagttggaccccctggccctgctggagctggtggagcccctggacccggaggacct
actggcaaagatggagcaaggggaactcgtggtgagactggccctgctggccgcccaggt
gaggctggtgctgctggacccccaggacctagtggagagaaaggatctgctggctctgat
ggagcccctggtgcccctggtatccctggaccccaaggtattgctggacagcgtggtatt
gtaggtctccctggacagcgtggagagcgtggtttccctggtctgcctggaccatctggt
gagcctggaaagcagggatcatctggacctgtcggtgagcgcggagcccctggacctgct
ggaccccctggactgtctggtccaactggagaggctggtcgtgagggatctcctggtcat
gatggtgcacctggtcgtgatggtccttccggccctaagggagaccgtggtgagactggc
ttggctggtccccctggacctcctggtgctcctggagctcctggaggagttggcccctct
ggcaaaactggtgaccgtggagagagtggtccctctggtcctgctggtcccgctggccct
gctggtgttcgtggtcctgctggtccagctggtgctaagggagacagaggagaggctggt
gaagctggagagagaggccacaagggacacagaggattcactggtgcatctggtctgccc
ggacctgctggaccccctggagagagaggccctgctggtgcttctggacccgctggacct
agaggaccttctggatcaaacggcgcccctggtaaggatggtgtgaacggtattcctgga
cccattggacctcctggacctcgtggtcgcaatggagagatgggacctgctggacctcct
ggacctcccggacccgctggacctcctggacctcccggcagtggatttgagttcgtcagc
cagcctcttcaggagaaggcccctgatcccctgcgtggtggccactaccgcgctgatgat
cctaatgtcatgcgcgatcgtgacatggaggttgacaccacccttaagaccctgacacag
aaggtcgagaagatccgcagcccagacggtacccagaagagcccagcccgcatgtgccgt
gatctgaggatgtgccaccctgagtggaagagcggcatgtactggattgatcccaaccag
ggctctcctctggatgccgtcaaggtccactgcaacatggagactggtgagacttgtgtc
taccccagcgagtccaccatccccatgaagaactggtacctcagcaagaacatcagagag
aagaagcacgtctggttcagcgagtccatgaccggtggattccagttccagtatggcagc
gatggagctgatcccgaggatgtcaacatccagatgactttcatgcgcctgatgtccaac
caggcctctcagaacgttacataccactgcaagaacagcatcgcctacatggattccgcc
accggcaacctgaagaaggctctgcttctccagggatccaacgacgtcgagatcagagcg
gagggcaacagccgcttcacatacagtgtcagcgaggatggctgcacgtcacacactggc
acatggggcaagacagtcattgactacaagacatcaaaaacatcccgcctgcccatcatt
gacattgctcctatggatgttggtgcacccgatcaggaatttggcgtccaagttggccct
gtttgcttcttgtaa
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