Oreochromis niloticus (Nile tilapia): 100697945
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Entry
100697945 CDS
T06104
Symbol
cpsf6
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6 isoform X2
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl03015
mRNA surveillance pathway
onl03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100697945 (cpsf6)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
100697945 (cpsf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
onl03019
]
100697945 (cpsf6)
Messenger RNA biogenesis [BR:
onl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
100697945 (cpsf6)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
100697945
NCBI-ProteinID:
XP_003445012
Ensembl:
ENSONIG00000011702
UniProt:
I3K0U1
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Position
LG17:complement(10561005..10575524)
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AA seq
549 aa
AA seq
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MADGVDHIDIYADVEEEFSQEADYPVHDQIDLYDDVISPSANNGDAPEDRDYLDSLPAPG
GTEGGKSAPPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAIRVIGITDVLEIKFFENRAN
GQSKGFALVCVGSEASSRKLMELLSKRELHGQNPIVTPCNKQSLSQFEMQSRKSTQTGQM
SGEGKAGPPGAGPRGGFPMGSRGRGRFPGPPGPGGDRFPGPVGPGGPPPHLPGGMQGPPR
PPPGPPGPPGPPGPPPGQGLPLPLAGPPNRGDRPPPPVLFPGQFGQPPLGPLPPGPPPPG
YGPPPGPPPPQQGPPPPGPFPPRPPGPIGPPMALAPPPHLPGPPPGGPPPAPHVNPAFFP
PPGSNSMPPNDSRGPPGPNDPYGRPPPYERGDYGPGGRDMDTSRTPLSEAEFEEIMNRNR
AISSSAISRAVSDASAGDYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGIES
KSYGSASRRERSRERDHSRSREKSRRHKSRSRDRHEDYYRERSRERDRHRERDRDRDRER
EREREYRHR
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggtgtggatcatatcgacatctacgccgacgtcgaggaggagtttagccag
gaagctgactacccagttcatgatcagatcgacctgtatgatgatgtaatatccccatca
gccaataatggtgatgctccagaagaccgggattacttggattcactgccagccccaggt
ggcacagaaggagggaaaagcgccccgcccaacgtggtgtacacctacactggaaaaaga
atagccctgtacataggaaacctcacatggtggacaacagatgaggacttgacagaagct
atccgggtgataggcatcacagatgtgctggagataaagttctttgaaaatagagccaat
ggccagtcaaaagggtttgctctggtgtgtgttggttcagaggcatcctccagaaagtta
atggagctgctgtcaaagagggagctccatggtcagaatcccattgtcacaccatgcaac
aagcagtccctcagccagtttgaaatgcaatcacgcaaaagtacccagacaggccagatg
tctggggaaggaaaggctggtcctcctggtgctggaccccgtggcggtttccccatgggc
agccgagggagaggcaggttccccggaccacctggccccggaggagaccgcttccctggt
cctgtagggcctgggggtcctccaccacaccttcctggtggcatgcagggacctccacgc
cccccacctggtccaccaggtccccctggacctccaggaccacctccaggccagggtctt
ccacttcccctggctgggcctccaaatcgtggcgacaggcctcctccacctgttctcttc
cctgggcagtttggccagccaccactgggacccctgcctccaggtccacctcctccaggt
tatggccctccacctggtcccccacctcctcagcagggcccaccccctccaggacccttc
ccaccccgtcctcctggacctattggcccccctatggcattggctccaccaccacatctg
ccaggtcccccgccaggtggcccaccaccagcgccgcatgtgaaccctgccttctttcct
ccccctggcagcaacagcatgccacccaatgatagccgaggtccaccgggaccaaatgac
ccatacggccgccctccaccatatgaaagaggagattatgggcctggaggccgggacatg
gacacatcacggactcctctaagcgaggcagagtttgaggagatcatgaacaggaacaga
gccatctcctccagtgccatatctagagcagtttctgatgccagtgcaggtgattatggc
agtgctatagagactttggtgacagccatcagtctgattaagcagtccaaagtgtctgca
gatgaccgctgcaaggtcctcatcagttctctgcaggactgtctccatggcattgagtca
aagagctatggctctgcgtcaaggcgagaacgttccagggaacgtgaccacagtcgctca
agagaaaagagtcgacgacacaaatctcgtagccgagacaggcatgaggactattacaga
gaacgcagtcgggagagagatcgtcatcgtgagagggatcgggaccgtgaccgggaaaga
gagagggagagggaataccggcaccgttag
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