Oreochromis niloticus (Nile tilapia): 100700290
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Entry
100700290 CDS
T06104
Name
(RefSeq) collagen alpha-1(XI) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
100700290
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
onl00536
]
100700290
Glycosaminoglycan binding proteins [BR:
onl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100700290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
100700290
NCBI-ProteinID:
XP_003448518
LinkDB
All DBs
Position
LG18:24098019..24179279
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AA seq
1815 aa
AA seq
DB search
MEMQRWTTRWKTKRWLWDSTLIVTVTVILILQAANVRAAEPVDVLKVLDFQSSPEGIRKT
AGFCTMRRGSKPDVAYRVGKRAQLSAPTKQLFPGGVFPEDFSIVFTIKPKAGLQSFLLSV
YNQQGLQQLGVEVGRSPVFQYEDQHGKPVPDEYPLFRSVKLSDGKWHRVAISVEKKSVTI
IVDCKKKVTRPLARSDHAIISTEGITVFGTRILDEEVFEGDIQQLLIVADPRAAYDYCEH
FSPDCETPNHHDTPQAQEPEYEYTNYEYGDNYDYNDGAITTDSSPTEAAKTQTNVGGDYY
TDEFDYTVVDGSQPENPTDTAGQGEAYTEEIVDDYITGVEEVGVDPTTGVETAAPEVDPG
TDVYEFKEYDLNAYDNKEFTEKQYNYESYDEFDYNAKPTSVPHEEHVGPGAPAETDIKES
SVHGGQRYLGEKGEKGEPAVIEPGMLVEGPPGAPGPAGVTGNPGLQGPPGPPGDPGQRGS
PGRPGIPGSDGVPGPSGTILMLPFRAGGEAHKGPVITAQEAQAQAILSQARLAMRGPPGP
AGMAGRSGPVGGPGAPGLKGDGGDPGPQGPRGLQGSTGPPGKSGKRGRNGADGARGMPGE
AGAKGDRGFDGLPGLPGEKGHRGEQGSTGPPGPPGEDGPRGEDGQVGQRGVAGEMGPRGL
LGPRGSPGPAGQRGLPGLDGQPGPKGNMGPQGEAGPPGQQGMPGPNGLIGPQGPIGPPGE
KGPQGKQGLHGLAGADGPPGHPGKEGPPGEKGAAGHPGPMGSIGYPGPRGVKGAEGIRGL
KGDKGEKGEDGFPGFKGDMGLKGDKGENGVLGPRGEDGPEGPKGKSGPTGESGPMGSAGE
KGKLGVPGLPGYPGRQGSKGSNGFPGFPGANGEKGARGIAGKSGPRGQRGPTGPRGGRGA
RGPTGKPGAKGNSGNDGPPGLPGERGPQGPQGPVGFPGPKGPNGPPGKDGLPGHPGQRGE
TGFQGKTGPPGPGGVVGPQGPTGETGPSGERGHPGSPGPPGEQGLPGAAGKEGGKGDPGL
QGPSGKPGPAGLRGFQGARGLPGAMGPGGLKGGEGPQGPPGPIGSPGERGPAGSGGPIGP
TGRNGPQGPPGPAGEKGGPGEKGPMGPAGRDGIQGPIGLPGPAGPQGPPGEDGDKGEVGG
PGQKGSKGDKGELGPPGPTGLQGVVGAPGPAGSDGEAGPRGQQGMFGQKGDEGPRGFPGL
PGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGSGGASGAQGPPGSIGTMGGVGE
KGETGEAGNPGPPGEPGIGGPKGETGEKGETGPPGAAGPAGARGPPGDDGPKGNPGPVGF
PGDPGPPGEPGAAGLDGLPGDRGDDGEAGQPGPSGPSGEAGVPGPPGKRGPAGPAGQSGR
QGEKGSKGEAGAEGPVGKTGPVGPQGPPGKPGAEGLRGIPGPVGEQGLAGASGQDGPPGP
IGPPGLPGMKGDSGSKGEKGHPGLIGLIGPPGEPGEKGDRGLPGPQGTGGGKGEPGINGP
PGPLGPPGPPGISGPQGQKGAKGSTGSTGQKGDPGLIGAPGPPGPAADIIQPLPIQQSSR
KTRRQAEMQGDEALADYSVDGVEGMEDVFGSLNNLKQDIERMKFPMGTQDNPARTCNDLH
LSQPDFPDGEYWIDPNQGCIGDTIKVFCNFTAGGETCIYPDKKSTGARISNWPKESPGSW
FSEFKRGKILSYVDAADNTINPVQMTFLKLLSSSARQNFTYICHQSVAWHDKDADNYDKA
LRFLGSNDEEMSYDNNPFIRPLMDGCSAKQGYAKTVLEINTPRIDQLPIIDVMLNDFGKS
NQRFGFEVGPVCFLG
NT seq
5448 nt
NT seq
+upstream
nt +downstream
nt
atggagatgcaaagatggaccaccaggtggaaaacgaaaaggtggctatgggattcaacg
ctaatcgttacggtcacagttattttaattctccaagctgccaatgttagagcagctgaa
ccagtggatgtactgaaggtgctggattttcagagctctcctgaaggaataaggaaaaca
gcaggcttctgcacaatgcggagaggatccaaacccgatgtagcttatcgagtgggaaaa
agggctcagctcagtgctccgactaagcagcttttcccagggggggtattcccagaggat
ttctctatagtgtttaccatcaagcccaaggctggcctccagtccttcctgctttctgtg
tacaaccagcaaggcttgcagcagcttggagtagaggtgggccgttcccctgtcttccaa
tatgaggaccagcatggcaagcctgtcccagacgagtaccctttgttccgttccgtcaaa
ctttctgatggcaaatggcatcgcgtagctatcagtgtggagaagaagagcgttaccatc
attgtggactgtaagaaaaaggtgacaagaccactcgccagaagtgaccatgccattatc
agcacagagggcatcacagtctttggcacccgaatcctagatgaagaggtctttgagggt
gacatccagcagctgctgatagtggcagaccccagggcagcctatgactactgtgaacac
ttcagccccgactgtgaaacccccaaccatcatgacaccccgcaggctcaggaacctgag
tatgagtacactaactatgagtacggtgataactatgactacaatgacggagcgataacc
actgactcttccccaaccgaagcagccaaaactcagacaaatgtgggtggagactattat
acagatgagtttgactacaccgtagtggatggaagtcaacctgaaaatcccactgatact
gcaggacaaggcgaggcgtacacagaggaaatagtggatgattacatcactggtgtggaa
gaggtcggtgtggatcccactactggtgtggaaaccgctgccccagaggtggacccaggg
actgacgtgtatgagtttaaggaatacgacctgaatgcatatgacaacaaagagtttaca
gagaagcaatataattatgaaagctatgatgaattcgactacaacgccaagcctacatct
gtaccacacgaggaacatgttggccctggtgctccagctgaaacagatatcaaagagagc
agtgtgcatggaggtcaaaggtacctgggagaaaaaggagagaagggcgaacctgctgtc
atagagccggggatgcttgtagaaggacccccaggagcccctggcccagcaggtgttact
ggtaacccaggattgcaaggtcccccaggtccaccaggagaccctggtcagaggggctct
cctgggcgtcctggtattcctggttcagatggtgttcctgggccttcagggacaattctg
atgcttccattccgcgcaggtggtgaagcacacaaaggacctgtgattacagcccaggaa
gctcaggctcaagccattctgtctcaggctaggctggcaatgagaggtcctccagggcca
gcgggcatggcaggaagatctggacctgtgggaggacctggtgctcctggacttaaaggt
gacggtggtgatcctgggccacagggacccagaggtctacaaggctcaactggtccacca
ggaaaatcaggaaaaaggggtcgaaatggagctgacggtgcacgaggaatgccaggagaa
gcgggagccaagggcgatcgaggttttgatggtctccctggtcttcctggagagaaggga
catagaggagaacagggctcgacaggtcctccaggacccccaggagaagatggcccaaga
ggtgaagatggccaggttggacagagaggtgtggctggagagatgggtcctagaggtttg
cttggccccagagggtctcctggccccgcaggacagcgtggtcttcctggtcttgatggg
caacctggtcctaaaggaaatatgggtccacaaggagaggcagggcctcctgggcagcag
ggtatgcctggtccaaatggtcttattggtcctcaaggtccaatcgggcctcctggtgaa
aaaggacctcaagggaagcaaggtctgcatggcctagctggtgccgatggtcctcctggt
cacccaggcaaagagggtcctccaggcgagaaaggagcagctggtcatccaggtcctatg
ggatccatcggctaccctgggcctcgcggtgtgaaaggcgctgagggaattagaggcctt
aaaggtgacaaaggagaaaagggagaagatggatttccaggatttaaaggtgacatgggg
ctcaaaggtgacaagggtgaaaatggcgtactagggcccagaggagaggatggccctgag
ggtcctaagggaaagtcaggacccactggggagtctggccctatggggtcagctggagag
aagggaaaacttggagttcctggattgcctggttaccctggaagacaagggtcaaagggc
tccaatggctttcctggattccctggggcaaacggcgagaaaggagcaaggggaattgct
ggcaaatctggccctagagggcaacgtggcccaacgggtccacgtggtggccgtggtgct
agaggaccaacaggaaagccgggtgctaagggcaactcaggcaatgatggacctcccggc
ctgccaggggagcggggacctcaaggaccacagggacctgtcggcttccctggacccaaa
ggacctaatggcccaccggggaaagacgggctgcccggtcatcctggacagcggggagaa
acgggcttccaaggaaagactggacctccggggcctggaggagtggttggaccacaggga
ccaactggagagacaggaccaagtggagagcgaggacatcccggctctcctggtccacct
ggtgaacaaggtctacctggagctgctggaaaagagggcggaaagggtgatccaggtctt
cagggtcctagcggcaagccaggacctgctggcctgagaggtttccaaggtgcaagaggt
cttccaggggccatgggtccaggtggcttaaagggaggagaagggcctcagggtccccct
ggccccatcggttctcctggagagagaggtcctgctggctctggaggtcccattggtccc
acaggacgtaatggtccccaaggaccacctggccctgctggagaaaaagggggtcctgga
gagaaaggtcccatgggtcctgctggccgtgatggcattcaaggtcctattggtcttcct
ggtccagctggtccacagggtccccctggtgaagatggtgacaagggagaagttggtgga
cctggacagaagggaagcaaaggagacaagggtgaacttggtccaccaggcccaacgggt
ctccagggtgtagttggagctcctggtccagctggcagtgatggtgaagctggaccaaga
ggacagcagggtatgtttggccagaaaggagatgaaggaccaagaggattcccaggttta
cccggacccattggactgcagggtttgcccggccctcctggtgagaagggagagaatgga
gacgtcggaccaatgggtccacctggtcctcctggccccagaggtcctcagggttccggt
ggagccagtggtgcacaaggtcctcctgggagtattggtacaatgggaggtgtcggtgaa
aagggagaaaccggcgaggctggcaacccaggaccacctggagagcccggtatcggcggc
ccgaaaggagagacgggtgagaagggagaaactgggcccccgggagctgctggacccgcc
ggtgcacgtggaccccctggagatgatggtcccaagggtaaccctggtcctgtcggcttc
ccaggagaccctggcccccctggtgagcctggtgctgctggtctggatggtttacctgga
gacagaggagatgatggagaggctggacagccaggcccttcaggtccatctggtgaagct
ggagtaccaggacctcctggcaaaaggggacccgctggaccagcaggtcagtcaggcaga
caaggagaaaagggatctaagggagaagctggagcagaaggacctgttgggaaaactgga
cctgtgggaccccaaggtccccctggaaagcctggtgctgagggtcttcgtggaatccct
ggccctgttggtgagcaaggactcgctggtgcttccggtcaagatggccctcctggtcct
attggaccccctggacttcctggtatgaaaggtgactctggatccaagggagagaagggt
cacccaggtctaattggtctaattggacctcctggtgaacctggagagaagggagacaga
ggtcttcctggaccccagggaactggaggtggcaagggagagcctggcattaatggtcca
ccaggtcctcttggccctcctggccctcctggaatttctggtcctcaaggacaaaagggc
gcaaaaggatcaaccggttcgactggtcagaagggagaccctggattgattggggcaccc
ggaccacctggtccagctgctgatatcatccagcccctgcccatccagcagtcttcccga
aagaccagaaggcaagctgagatgcagggagatgaggcactggcagactacagcgttgat
ggagtggagggaatggaggatgtttttggatctctcaacaacctcaaacaggacattgag
cgcatgaagttcccaatgggcacccaagataacccagccaggacctgcaatgacctgcac
cttagccagcctgatttcccagatggtgaatactggattgatccaaaccagggctgtata
ggagacaccatcaaagtgttctgtaacttcacagcaggtggagaaacctgcatctaccca
gacaagaaatccacaggggctagaatatctaactggcctaaggagtctccaggttcatgg
ttcagtgaatttaagcgtggcaaaatcttaagctacgttgatgcagcagacaacaccatc
aacccagtgcagatgaccttcctgaagctgctaagctcctcagctcggcagaacttcacc
tacatttgccatcagtctgtggcctggcacgataaagatgctgacaactatgacaaggca
ctgcgcttcctgggctccaacgacgaggaaatgtcttatgacaataatcccttcatcagg
ccgctgatggacggctgctcggcgaagcagggctatgcaaagacggtgttggagatcaac
actccccgcatcgaccagttgcccataattgacgtcatgctgaatgactttgggaaatcc
aaccagaggtttggctttgaggtcggacctgtgtgtttccttggctag
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integrated database retrieval system
