Oreochromis niloticus (Nile tilapia): 100709333
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Entry
100709333 CDS
T06104
Symbol
bard1
Name
(RefSeq) BRCA1-associated RING domain protein 1 isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
100709333 (bard1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
onl03019
]
100709333 (bard1)
04121 Ubiquitin system [BR:
onl04121
]
100709333 (bard1)
03036 Chromosome and associated proteins [BR:
onl03036
]
100709333 (bard1)
03400 DNA repair and recombination proteins [BR:
onl03400
]
100709333 (bard1)
Messenger RNA biogenesis [BR:
onl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
100709333 (bard1)
Ubiquitin system [BR:
onl04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
100709333 (bard1)
Chromosome and associated proteins [BR:
onl03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
100709333 (bard1)
DNA repair and recombination proteins [BR:
onl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
100709333 (bard1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank
zf-RING_6
Ank_2
Ank_4
Ank_3
Ank_5
BRCT
BRCT_2
zf-RING_5
PTCB-BRCT
zf-C3HC4_3
zf-RING_10
zf-C3HC4_4
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
100709333
NCBI-ProteinID:
XP_003445396
Ensembl:
ENSONIG00000004203
UniProt:
I3J8U9
LinkDB
All DBs
Position
LG16:complement(13361687..13384743)
Genome browser
AA seq
812 aa
AA seq
DB search
MDEDSSVQTVDWKKTKEAVANFRRLLLCSKCSDLMKEPVCLGLCEHMLCRSCAGPRAGDG
CVVCHSPAWVKDIQINRQLSSIVELFCGLESLLNPIKNPDSSVAEIQPDGPVLKNKKNFK
IWFSPRSRKVRCTVQKAAEITVPDSRSPGETAAAQQDTLTAQCQDLSVFNFTSSSQDSGS
SSSPRCNSEATNNRKKRSTKKNATSRNVPVQGATRTTRKQTKEIVKKKRLEAINQQWGIP
EEAHLSENEQVCADGARRSSKRVSFLSPVVTYDGPQPEMAQQSTDKLSPAKSTVRESLSE
GSETVLNCQTEPVQPSLESAFQHDQLSADVPKPNDNPKKPKNVSPSEHSSKRSRTEERNS
TLDNTPKRPRPSPGRRGRKSLSPISPVVLNPPSLTTPKSTKKSRKEGRDSPSVQASPSTE
SYRRSPCFNGASVGRPSPGSPAVMKRNHKGETLLHLAAIKGDVKAVKDLLDQGADPNLKD
NAGWTPLHEACNLGHLAVVEVLVSMGALLNTPGYENDSPLHDAVRNGHSSIVKLLLQLGA
SQNVLNLYGKRPADYAASLEMLEIFQEASEGTQYANARTSHSPSASLSVVNDCVRREQTI
VLLSSKLSPAERHQLVKLGQLLGGRMADTFSGSVSHIVVPEGQMPTTYSTLMGLLAGCWI
VRYKWVEACLQAGKWVPEAEHEAGEGPQRSRINRCSLLPPLFDGCFFFLLGSFKTPAKDE
LTKLLREGGAQLLNRQPKPDSDVTQTVNAAAYHALPGSDQALCTQYIIYDPQGPHKPAVV
RRGKVWSAPTTWVINCITAFSLLPVPDPELLV
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atggatgaggacagctccgtgcaaacagtggactggaagaagaccaaggaggcggtagca
aacttccgacggttgctactttgttccaaatgctcagatttaatgaaggaacctgtttgc
ttaggtttatgtgagcatatgctgtgcaggtcctgtgctgggccacgtgcaggagatggc
tgtgtggtgtgtcacagccctgcgtgggtgaaggacatccaaatcaacaggcagctcagc
agcattgtagaactcttctgtggcttagagtccctgctcaatcctattaaaaatccagac
tcatctgtggctgagattcagcctgatggccctgtacttaaaaacaagaagaattttaaa
atctggttcagtccccgcagccgcaaggtacgctgcacagtccaaaaggctgcagagatc
accgtaccggacagcaggtctcctggagaaacagctgcagcacagcaagacaccctcact
gctcaatgccaggacctgtcagttttcaatttcacctcgtcctcccaagactctggctcc
tcttcttctccaagatgcaacagtgaagcaacaaacaacaggaagaagaggtcaactaag
aaaaatgctaccagcaggaatgtcccggtgcaaggagccaccagaaccacacgaaaacag
acgaaggaaattgtgaagaagaaaaggttagaagccataaaccagcaatggggaatccca
gaagaggctcatctctctgaaaatgagcaggtgtgtgctgatggagcaagaaggtccagt
aaaagggtttctttcctaagccctgttgtcacttatgatgggcctcagcctgagatggca
cagcagagcactgacaaactcagtcctgccaagagcacagtgagagagagtctctcagaa
ggcagcgagactgtactgaattgccaaaccgaacctgttcaaccctcgctggaaagtgcc
tttcagcatgaccagctgtctgcagatgtacccaaaccaaatgataaccccaaaaaaccc
aagaacgtgtctccatccgagcattcctcaaaaagatccaggaccgaagaaagaaacagc
actttggacaacactccaaaaagaccaagaccttctccaggcagaagggggagaaaatca
ttgagtccgatctctccagttgtgctaaatcctccatctctgactacccctaagagcacc
aaaaagtccagaaaagagggcagggacagcccctctgttcaagccagcccctccacagaa
agttacaggagatctccctgttttaatggtgcgtctgttggacggcccagtccaggaagc
cctgcagttatgaagaggaaccacaagggagagaccctgcttcatttagctgcaatcaag
ggagatgtaaaggctgtcaaggatcttctggaccagggggctgaccctaacctaaaagat
aatgcggggtggacacctctgcatgaagcatgtaacctgggtcatctggcagttgtggaa
gtactggtctcaatgggagccctcttgaacacgcctgggtatgagaatgactccccactc
cacgatgctgtcaggaatggacattcatctattgtaaagctactactgcagcttggcgcc
tcacagaacgtattaaatctgtatggaaagcggcctgcagattatgcagcgagtctggag
atgctggagattttccaagaagcctcagaaggaactcaatatgcaaatgctcgtacatct
catagcccctcagccagtctctccgtggtaaatgactgtgtgaggagggaacaaaccata
gtgcttttgtccagcaagctctcaccagctgaacggcatcaactggtcaaactgggacag
ctactgggagggaggatggctgacacattttctggctcagtgagtcacattgtggtgccg
gaagggcaaatgccaaccacctactccaccctcatgggtcttcttgctggctgctggatt
gttagatacaaatgggtggaggcatgtctccaggcggggaagtgggtgcctgaagctgag
catgaagcaggagaaggcccccagcgcagtcgcatcaacagatgcagcttgcttccacca
ctgttcgatggatgtttcttcttccttcttggctcttttaagacgcctgccaaagatgag
ctcacaaaactgctcagggagggaggagctcagctactgaaccggcaacccaagccagac
agtgatgtgacacaaactgtgaatgccgcagcctatcatgccctgccagggtccgaccag
gccctttgcacacagtacatcatctatgaccctcaaggccctcacaagcctgcagtagtg
agacgaggcaaggtgtggtcagctcccaccacctgggtcatcaactgcatcactgccttc
agcctcctccctgtaccagaccctgaactattggtctaa
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