Oreochromis niloticus (Nile tilapia): 102079800
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Entry
102079800 CDS
T06104
Symbol
aplf
Name
(RefSeq) aprataxin and PNK-like factor isoform X1
KO
K13295
aprataxin and PNK-like factor [EC:3.1.-.-]
Organism
onl
Oreochromis niloticus (Nile tilapia)
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
onl03400
]
102079800 (aplf)
DNA repair and recombination proteins [BR:
onl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
102079800 (aplf)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
102079800 (aplf)
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Gene cluster
GFIT
Motif
Pfam:
zf-CCHH
FHA_2
FHA
Motif
Other DBs
NCBI-GeneID:
102079800
NCBI-ProteinID:
XP_005461355
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All DBs
Position
LG6:41347920..41355102
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AA seq
473 aa
AA seq
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MSGFDLVPVDGGDPVHLPPGETVLGRGPLLGISDKRVSRHHGLLENLSGELRLKATHLNP
CFIQSTPTNDPRPLQKGSWHVLRHGDFFSLLPGRFIYEVVSVGGDERTPSVAPHRNSQML
EEEEETLAVPPDPAVDPRPAVRLNQEEPPPSAAPEEDEEAERPFKGDSVGSAKDDQRDAA
PSVTRRRVLPAWMLVAVPAAKTPSSTPTVRTCRPAAPSPATKRAAVAQATPTATSSPEEA
EFSRKEEERPRKKKRKLSDDEEQPEEAAAHHPAKPNRSEDSGENDRFTMKAEAEDKANES
EKEGKMSENNGTSKRAEPAGSNGDAESSPAPSKARVRTPCPYGKDCYRKNPLHFQECSHP
GDTDYEEEEEEEEEEEDKPECPYGTDCYRKNPLHRKEYKHTKKPVNPPTARHVAKKTPAD
EDDEDEYEDSFINDDSEDAGDDSDYVPPDSDDSGKEDIKGLQREATAFLKRRK
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgtctggcttcgacctggtcccggtggacggcggggatccggtccacctgccacccgga
gagacggtgttgggccggggcccgttactgggaatcagtgataagcgagtctccagacac
cacgggctgctggagaacctgagcggagagctacgcctcaaagccacacacctgaacccg
tgcttcattcagtcgacccccaccaatgaccctcgacctctgcagaaaggttcctggcac
gtcctccgtcatggagacttcttctctctgctgccgggtcggtttatctacgaggtggtg
tcagtgggcggagacgagcgcacgccaagtgtcgctccccacaggaacagccagatgtta
gaagaagaagaagagacacttgctgttcctcctgatccagctgtggatccacgtccagct
gtcagactgaaccaggaggagccgccgccgtcagcagctccggaggaagacgaggaggcc
gagagaccgttcaagggtgactcggtgggatcggcgaaggatgatcagcgagacgccgct
ccgtctgtgaccaggagaagagttttacctgcatggatgctggtggctgtacctgctgca
aagactccgtcctccaccccgacagttcggacctgccgacctgcagcgccatcacctgcc
actaaacgagcagctgtcgcacaagccacgcccacagcaacctcctcacctgaggaggcg
gagttcagcaggaaggaggaggagaggccgaggaagaagaagagaaaactgagtgatgac
gaagaacaacctgaggaggccgccgcccaccatccggctaaaccaaacaggtctgaggac
agcggcgagaacgaccgcttcaccatgaaggcggaagcggaggacaaagcaaacgagtct
gagaaagagggcaagatgtctgaaaacaacgggacgtctaaacgagccgagcccgccggg
tcgaacggagacgccgagtccagccccgccccttccaaagcccgagtcagaacgccgtgt
ccgtacgggaaggactgctacaggaagaacccacttcatttccaggagtgcagtcaccct
ggagacacggactacgaggaagaggaggaggaggaggaggaggaggaggacaaacctgag
tgtccgtacggcaccgactgctacaggaaaaaccccctgcacaggaaggaatacaaacac
acaaagaaaccagtaaatccccccacagctcgccacgttgccaaaaagactcccgctgat
gaagacgacgaggacgagtacgaggacagcttcattaatgacgacagcgaggacgcgggc
gatgactcggactacgtccctcctgactcagacgacagcgggaaggaggacatcaaaggc
ctgcagagagaggctacggccttcctgaagaggaggaagtag
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