Oceanobacillus oncorhynchi: NP440_08170
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Entry
NP440_08170 CDS
T08799
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
oon
Oceanobacillus oncorhynchi
Pathway
oon03030
DNA replication
oon03410
Base excision repair
oon03420
Nucleotide excision repair
oon03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
oon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NP440_08170 (ligA)
03410 Base excision repair
NP440_08170 (ligA)
03420 Nucleotide excision repair
NP440_08170 (ligA)
03430 Mismatch repair
NP440_08170 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
oon03032
]
NP440_08170 (ligA)
03400 DNA repair and recombination proteins [BR:
oon03400
]
NP440_08170 (ligA)
Enzymes [BR:
oon01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NP440_08170 (ligA)
DNA replication proteins [BR:
oon03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NP440_08170 (ligA)
DNA repair and recombination proteins [BR:
oon03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NP440_08170 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NP440_08170 (ligA)
MMR (mismatch excision repair)
DNA ligase
NP440_08170 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NP440_08170 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
RNA_pol_A_CTD
HHH
zf-NADH-PPase
DUF1877
Motif
Other DBs
NCBI-ProteinID:
UUI41502
LinkDB
All DBs
Position
1623749..1625758
Genome browser
AA seq
669 aa
AA seq
DB search
MNKQEIKERMDSLVEVLNQYGYSYYVLDNPTVPDSEYDQKLRELEDLEKAYPDLAREDSP
TQRIGGEPLDAFRKVTHETPMMSLGNAFNEQDLRDFARRAQEGVSGEVTFVCELKIDGLA
ISLKYQEGKFVLGSTRGDGRIGEDITSNLRTIRSIPLSIKEAGTLEVRGEAFMPHKSFLE
MNKEREEKGEEPFANPRNAAAGSLRQLNPKIAAKRNLDIFLYGVGEWENSNITSHSESLE
ALHRLGFKTNKEWKRCKSIEEVLEFVTYWTEHRKDLNYEIDGIVVKVDSLDHQDELGFTA
KSPRWAIAYKFPAEEVVTTLKDIVLSIGRTGVVTPTAILEPVRIAGSTVQRASLHNEDLI
REQDIRIGDQVVIKKAGDIIPKVVRSIIEQRTGEEKEFHMPEECPDCGNELVRLEGEVAL
RCINPNCPAQLMEGLIHFVSRNAMNIDGLGEKVIIQLFREDLVHTIADLYRLEKEDLLNL
ERMGEKSVTNLLNAIEASKANSLERLLFGLGIRFIGSKAAQTLAMEFETMERLQHANLEE
IVAIEEIGEKMADSIVRYFEEEKVTQLLKELKELGVNMTYTGQKKSEIKTDSLFSGKTVV
LTGKMEQYTRKEAKELIESLGGAVTGSVSKKTDVLIAGTDAGSKLEKAEKLGIEVWSETE
LKEATEGEE
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaacaagaaatcaaagaacgcatggattccttagtagaagtccttaatcaatat
ggttattcctattatgtattggacaacccgactgtacccgattcggagtatgatcagaag
ttaagggagctggaggatttagaaaaagcgtatccagaccttgctagagaggattctcct
actcagcggattggtggagaaccgcttgatgcttttcggaaggtaacgcatgaaacgcca
atgatgagccttggcaatgcttttaatgagcaggatctaagagattttgccagacgggct
caagaaggcgtatctggtgaggttacttttgtgtgcgagttgaaaatagatggtttagcg
atttctctaaaatatcaggagggcaaatttgttctgggttccactcgcggcgatggaaga
attggtgaagacattacatctaacctgcgcacgatacgaagtattccattaagtatcaaa
gaagctggaactttggaggttcgcggcgaagcttttatgccgcataagtcctttttagag
atgaataaagaaagggaagaaaagggtgaagaaccgtttgccaacccgagaaatgcagct
gccggatcattgaggcagctgaacccgaaaattgcagctaaacgtaatttagatattttt
ctatacggcgtcggtgaatgggaaaacagtaatatcaccagtcatagtgaaagcttagag
gccttgcatcgtctgggatttaaaacaaataaagaatggaaaagatgtaagagcattgaa
gaggtattggaatttgttacgtattggaccgaacaccgcaaggatttaaattacgaaatt
gacgggattgtggtgaaagtagacagcctggatcatcaggatgaactgggctttactgcg
aaaagcccgcggtgggcgattgcttataaattcccggcagaagaagttgtaactacttta
aaagatattgtattaagcatcggcagaacaggcgtagtgactccgacagccattcttgaa
cctgtccgtatagcaggatcaactgtgcagcgggcttccttgcataacgaggatttaatt
cgtgaacaggatatccggattggggatcaggtagttatcaaaaaagcaggcgatattatt
ccaaaggttgtccgctcgattatcgaacagcggaccggggaagaaaaagaatttcatatg
cctgaggaatgtccggactgcggcaatgaactggttcgtctagaaggggaagtagcatta
cgctgcatcaatccgaactgtccggcacaattgatggagggattgattcactttgtctcc
cggaatgcgatgaatattgatggtttaggagaaaaagttatcattcagcttttccgtgaa
gatttggtccataccattgctgatttatatcgattggaaaaagaggatttgttgaattta
gaacggatgggcgaaaaatccgttactaatcttttaaatgctattgaggcttctaaagcc
aattcattggaaagattattgttcggacttgggattcgttttattggttcaaaagcagca
cagactctggcgatggaatttgaaaccatggagcggcttcagcatgccaacttggaggaa
attgtagccattgaagaaattggcgagaaaatggcagattccattgtccgatattttgaa
gaagaaaaagtgacgcagctattgaaggaattaaaagagctgggtgtaaatatgacttac
accggtcaaaagaaatcagaaataaaaacagatagcttattctctggaaaaacagttgta
ttgactggtaaaatggagcagtatacgagaaaagaagcgaaagagctgattgaatcgtta
ggcggggcagtaacaggcagtgtaagtaaaaaaacagatgtccttattgctggaacggac
gccggatcaaagctggaaaaagcagaaaaactggggatagaagtgtggagtgaaacagag
ttaaaagaagcgaccgagggagaggagtga
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