Orcinus orca (killer whale): 101271604
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Entry
101271604 CDS
T05247
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X2
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
oor
Orcinus orca (killer whale)
Pathway
oor03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oor00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101271604 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oor03021
]
101271604 (PCF11)
03019 Messenger RNA biogenesis [BR:
oor03019
]
101271604 (PCF11)
Transcription machinery [BR:
oor03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
101271604 (PCF11)
Messenger RNA biogenesis [BR:
oor03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
101271604 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
CFIA_Pcf11
SHOCT
Motif
Other DBs
NCBI-GeneID:
101271604
NCBI-ProteinID:
XP_004271885
LinkDB
All DBs
Position
8:60132684..60159900
Genome browser
AA seq
1555 aa
AA seq
DB search
MSEQTPAEAGTAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESSTPGTVV
SSPSISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSV
QQETSNLGPGTAQSKLHVSQIPPMAVKSPHQVPVQPEKSRPGPSLQIQDMKGTNRDPRLN
RLSQHSSHGKDQSHRKEFLMNTLSQSDIKTSKTVPSEKLNSSKQEKSKSGEKITKKELDQ
LDSKSKSKSKSPSPLKNKLSHTKDLKSQESESARVSDMSKRDPRLKRHLQDKTDSKDDDL
KEKRKTAEKKDKDEHMKSSEHRLVGSRNKIINGIVQKQDTITEESEKQGTKPGRSSTRKR
SRSRSPKSRSPIIHSPKRRDRRSPKRRQRSMSPTSTPKAGKIRQSGVKQSHMEEFTPPSR
EERNAKRSTKQDVRDPRRIKKTEEERPQETANQHSTKSGTEPKENVENWQSSKSTKRWKS
GWEENKSLQQGDEHSKAPHLRHRESWSSTKGILSPRAPKQQHRLSVDANLQIPKELTLAS
KRELLQKTSERLASGEITQEDFLVVVHQIRQLFQYQEGVREEQRSPFNDRFPLKRPRYED
SDKPFVDSPASRFAGLDTNQRLTALAEDRPLYDGPSRPSVARDGPTKMIFEGPNKLSPRI
DGPPTPGSLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQ
AGGGGFRFEGSPGLRFEGSAGGLRFEGPGAQPVGSLRFEGHRGQPVGGLRFEGPHGQPVG
GLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPSGGIRFEGPLLQQGVGMRFEGPH
GQSVAGMRFEGQHNQLGGNVRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGPSVPGGGLRI
EGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTGQPGPQRFDGPPGQ
QVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRLESVSFNQSGPYNDPPGN
AFNAPSQGLQFQRHEQIFDSPQGPNFNGPHGPGNQSFSNPLNRASGHYFDEKNLQSSQFG
NFGNLPAPMTVGNIQASQQVLTGVAQPVAFGQGQQFLPVHPQNPGAFVQNPSGVLPKGYP
DNHLSQVDVNELFSKLLKTGILKLSQPDSATTQVNEVAAQPPAEEEEDQNEDQDVPDLTN
FTIEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRTEKDVSRKVT
HRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQSVPAGPAGSV
ESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFDCTPSPSKTPVE
NPLNIMLNIVKNELQEPCESPKVKEERIDTPPACTEESIATATEIKTENDTVESV
NT seq
4668 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagcagacgccggccgaggccggtactgcgggggcccgggaggacgcctgtcgg
gattatcagtcatcactcgaagacctgaccttcaatagcaaaccgcacatcaatatgctg
accattctagccgaggagaacctgcccttcgccaaggagatcgtctctctcatcgaggcc
caaaccgccaaggctccctcctcagagaagcttcctgttatgtaccttatggattctatc
gtgaaaaatgttggaagagagtatctcactgcctttactaaaaatctagttgcaacattt
atttgtgtgtttgaaaaggtggatgaaaatactagaaaaagtttatttaagttacgttcc
acctgggatgaaatattccctttgaagaaactttatgccctggatgtcagagtcaattcg
ttagatcctgcttggcctattaaacctctgccccccaatgtgaatacatctagcatccat
gtgaatcctaaatttttaaataaatcgcccgaagagtcttcaacacctggcacagtggtc
agttcccctagcatctccactcctccaattgttccggatatacaaaagaatcttacccaa
gagcaactaataaggcagcagttactggcaaaacaaaagcagttgttagaacttcagcag
aaaaagctggagcttgagctagagcaagctaaggcacaactggcagtttctcttagtgtt
cagcaggagacatccaacttaggtcctggaactgcacaatccaaattacatgtttcacaa
attccccctatggcagttaaatctccccatcaggttcctgtgcaacctgagaaaagtcgt
ccaggtccatccttacaaattcaggatatgaaaggaactaaccgggatccccgtcttaat
aggttgagtcaacattcttctcatggaaaagatcagagtcacaggaaggaattcctaatg
aacacattgagccagtctgatattaagacaagtaaaactgtaccctctgaaaaactaaat
tcatccaagcaagaaaaaagtaaatcaggtgaaaaaataaccaagaaagaacttgaccaa
ttagattctaaatccaaatctaaatctaaatcaccatcacctttgaaaaacaaattatcc
cacacaaaagacttgaaaagtcaagaatctgaaagtgcaagggtgtctgatatgagcaag
agagatccaagattaaaaagacatcttcaggataagactgatagcaaagatgatgatcta
aaagagaagagaaaaactgcagaaaaaaaggataaagatgagcacatgaaatcatctgaa
cacagactggtgggaagtagaaataaaatcataaatggcattgtacaaaaacaggatacc
ataacggaagaatcggaaaaacaggggacaaaaccagggagatcaagtactagaaagcga
tcaagatcacgatcacccaagtcccggtcaccgattatacattctcccaagagaagagat
aggcggtcacccaagcgaaggcaaaggagtatgtctccaacctcaacacccaaagctggg
aagattcgccagtcaggagttaagcagtcacatatggaagagtttacaccaccttccagg
gaagaaagaaatgcgaagagaagtactaaacaggatgttcgagatccaaggcgaataaaa
aagactgaagaggaacgaccacaagaaactgcaaatcagcattccaccaagtcaggcact
gaaccaaaagaaaatgtagaaaattggcaaagttccaagtctaccaaacgatggaaatct
ggttgggaagaaaataaaagtttacaacagggtgatgaacatagcaaagctcctcatcta
aggcatagggagagctggtcaagcactaaaggaatcttgtcacctcgagctccaaaacag
cagcatcgattaagcgtagatgccaatcttcagattcctaaagagttaactcttgcaagc
aaaagagaattacttcaaaagacgagtgaacgtttagcatctggtgaaattacacaggaa
gacttccttgttgttgtgcatcaaattcgacagctatttcagtatcaagaaggtgtacga
gaagagcagagatcaccattcaatgatcgttttccacttaagcgacctagatatgaagat
tcagataaaccatttgtagatagcccagcatcaagattcgccggccttgatacaaatcag
cgacttacggctttagctgaagatagaccattatacgatggacctagcaggccatcagta
gcgagagatggcccaaccaagatgatttttgaaggacctaataagttaagccctagaatt
gatggacctcctacgccaggttctcttcggtttgatgggtcaccgggacaaatgggggga
ggtggccctttgagatttgaaggaccacaaggccagttaggaggtgggtgtcctttgaga
tttgaaggtcctccgggaccagtagggacacctctgcggtttgaggggccaattggtcaa
gcaggaggaggtggttttcggtttgaaggttcccccggtctgaggtttgagggatctgca
ggtggtttgcgatttgaaggaccaggggcccagcctgtgggtagtctcaggtttgaggga
caccggggtcaacctgtgggtggtctgaggtttgagggacctcatggtcagcctgtgggt
ggacttagatttgataatccccgaggtcagcctgtaggtggacttagatttgagggaggt
catggtccatcaggggctgcaattaggtttgatggacctcatggtcagccatcaggtggg
atcagatttgagggcccgttgctacagcagggagttgggatgagatttgagggcccccat
ggtcagtcagtagctggtatgagatttgaagggcaacataatcaacttggtgggaacgtt
aggtttgagggtccacacggtcagccaggggttgggatcagatttgaaggacctttagtc
caacaaggaggtggaatgaggtttgagggtccttctgtaccaggaggtggcctgagaatc
gaaggacctctgggtcaaggtggtccaagatttgaaggttgtcatgctttaaggtttgat
gggcaaccaggtcagccatcactcttgccaagatttgatggattacatggtcagccaggt
cctagatttgaaagaactggtcagccaggcccgcagagatttgatggaccacctggacag
caggttcaaccaagatttgatggtgtacctcaaagatttgatggtccacaacaccagcaa
gcatcaaggtttgatattcctcttggtcttcaaggcacacgatttgacaatcatccttca
caaaggcttgaatcggtatctttcaatcagagtggcccatataatgatccacctggcaat
gcttttaatgccccatcccaaggactgcagttccaaagacatgaacaaatatttgattca
cctcaaggaccaaattttaatggaccacatggccctggaaaccagagtttctcgaatccc
cttaacagagcttctggacactattttgatgagaagaatcttcagagctctcagtttgga
aactttggcaatttacctgctccaatgacagtaggaaatattcaggcatctcagcaggtt
ctgactggtgttgctcagccagtagcatttggccaaggacaacaatttttgccagttcat
ccacaaaatcctggagcatttgttcagaatccttcaggtgtccttcctaagggatatcct
gataatcatctcagtcaggtggatgtaaatgaattgttttcaaaactgctaaaaacagga
attctcaaattgtcccagcctgattcagctacaacacaagtaaatgaagttgctgctcag
ccccctgctgaggaggaagaagatcaaaatgaagatcaagacgttccagatcttaccaat
tttacaattgaagaattgaaacaacgttatgatagtgttataaatcgactgtatactggt
attcagtgttactcttgtggaatgaggtttacaacatcacagacagatgtatatgcagat
cacttggactggcattatcgacaaaatagaactgaaaaagatgtaagcagaaaagtcact
catagacgttggtactacagtttaacagactggatagaatttgaggaaatagctgatctg
gaagaacgtgcaaagagccagttttttgaaaaggtgcacgaagaagtcgtgctcaaaact
caggaggctgctaaagaaaaggagttccaaagtgtacctgctggaccagcaggatcagtt
gagagttgtgaaatttgtcaagaacaatttgaacagtactgggatgaagaagaggaggag
tggcatttaaaaaatgctattagagtagatggaaagatttatcatccatcatgttatgaa
gattatcaaaatacatcttcatttgattgtacaccatctcccagcaagacaccagttgaa
aatcccttgaacattatgttgaacattgttaaaaacgaattgcaggaaccctgtgaaagt
cccaaagttaaggaagaacggattgatactccaccagcttgtacagaggaaagcatagca
acagccactgaaattaaaacagaaaatgacacagtcgagtcagtttaa
DBGET
integrated database retrieval system
